Basic Information
Locus ID:
Ag4G00564
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Gpi-anchor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 22398459 | 22407250 | + | Ag4G00564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 45,402.11 Da | 37.78 | 84.87 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01650 | Peptidase C13 family | 33 | 260 | 1.1E-44 | IPR001096 |
| Gene3D | G3DSA:3.40.50.1460 | - | 30 | 309 | 1.2E-100 | - |
| PIRSF | PIRSF500138 | GPI8 | 2 | 390 | 9.7E-147 | IPR028361 |
| PIRSF | PIRSF019663 | Legumain | 2 | 244 | 1.5E-39 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 34 | 58 | 1.3E-36 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 108 | 123 | 1.3E-36 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 135 | 154 | 1.3E-36 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 184 | 200 | 1.3E-36 | IPR001096 |
| PRINTS | PR00776 | Hemoglobinase (C13) cysteine protease signature | 59 | 88 | 1.3E-36 | IPR001096 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08750.1 | Peptidase C13 family. | 0 |
| RefSeq | XP_017242730.1 | PREDICTED: putative GPI-anchor transamidase [Daucus carota subsp. sativus] | 0 |
| P49018 | GPI-anchor transamidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GPI8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7AU76 | Putative GPI-anchor transamidase isoform X1 OS=Davidia involucrata OX=16924 GN=Din_029678 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.888071 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.134427 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.500106 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.260942 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.68149 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.500587 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.670526 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.820122 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.297664 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.09372 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.817032 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.100559 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.351961 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.614264 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.548969 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.025042 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.399223 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.771326 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.487669 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.511174 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.363282 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.339404 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.84127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.314267 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.810234 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.513215 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.03465 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.172079 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.487955 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.546468 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.356558 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.283044 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.983781 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.418932 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.58277 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.105055 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.293929 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.324144 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.233187 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.306867 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.407163 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.841647 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.301644 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.115423 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.754421 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.007161 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.196207 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.944633 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.71059 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 9.961522 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19268 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21223 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah011595, Ah011598 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg32257 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24901 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009514 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80361, Sgl82823 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016216, gene:ENSEOMG00000036695 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010250, CQ.Regalona.r1.9BG0012120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30183850 |
| Apiaceae | Apium graveolens | 2 | Ag4G00563, Ag4G00564 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000790, COCNU_03G015330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709585 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1034.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G10340 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007907m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g07390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g004420.2N, BniB03g002920.2N, BniB04g030990.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq04G0753, Ceq04G0772, Ceq04G0774, Ceq04G0775 |
| Casuarinaceae | Casuarina glauca | 6 | Cgl04G0863, Cgl04G0865, Cgl04G0883, Cgl04G0884, Cgl04G0885 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g02610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1170s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g33560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2223 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004652 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.996, CH07.747 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0106480, gene-QOZ80_2BG0160000 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0013000.1, HORVU.MOREX.r3.6HG0579780.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_021645, gene-QYE76_021646, gene-QYE76_042885 |
| Poaceae | Oryza coarctata | 2 | Oco03G005710, Oco04G005930 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g12740.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G089000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201997 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G032560, Chr15G023980 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G124700, Tel6E01G366100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG008140, gene_TRIDC1BG010300 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G060100.1, TraesCS1B02G078600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb205610_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34322 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15471 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.468, evm.TU.LG10.473, evm.TU.LG17.466 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23650 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.299 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7864 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5838 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5358 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.204 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010921 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7757 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-274 |
| Salicaceae | Populus euphratica | 1 | populus_peu19580 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629806 |
| Solanaceae | Solanum chilense | 1 | SOLCI003222100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002824 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5287_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1888 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03130.v3.1 |