halophFGD

Basic Information

Locus ID: Ag4G00547

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	21226826	21235330	+	Ag4G00547

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.32	46,128.29 Da	42.46	90.92	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13857	Ankyrin repeats (many copies)	34	80	8.1E-8	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	148	387	1.2E-24	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	146	392	4.41E-35	IPR011009
SUPERFAMILY	SSF48403	Ankyrin repeat	20	123	2.98E-16	IPR036770
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	124	398	2.3E-36	-
Gene3D	G3DSA:1.25.40.20	-	13	111	1.7E-19	IPR036770
SMART	SM00248	ANK_2a	47	76	5.2E-7	IPR002110
PIRSF	PIRSF000654	ILK	3	400	2.4E-81	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	142	394	21.107021	IPR000719
ProSiteProfiles	PS50088	Ankyrin repeat profile.	47	79	14.02492	IPR002110
ProSiteProfiles	PS50297	Ankyrin repeat region circular profile.	47	79	12.646742	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K06272 (integrin-linked kinase [EC:2.7.11.1])

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G18950.2	-
RefSeq	XP_017237405.1	PREDICTED: integrin-linked protein kinase-like [Daucus carota subsp. sativus]
Swiss-Prot	Q93Z30	Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1
TrEMBL	A0A166AV17	Protein DETOXIFICATION OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010718 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.400582	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.836826	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.562265	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.360977	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.667173	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.329063	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.971232	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.148895	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.276201	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.95633	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.482993	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.939472	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.356704	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.912647	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.854611	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.515128	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.319556	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.729734	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.79675	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.859033	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.541101	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.454198	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.682367	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.793786	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.465628	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.712144	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.334298	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.015247	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.985721	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.506907		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.552063		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.214516		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.0126		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.611762		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.608594		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.642143		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.479772		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.449846	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.476511	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.745446	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.220714	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.869054	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.919209	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.994247	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.725868	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.87402	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.850492	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.428591	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.562044	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag4G00547
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.2909.V1.1
Asteraceae	Flaveria trinervia	1	Ftri1G12649
Plantaginaceae	Plantago ovata	2	Pov_00029649, Pov_00029657
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.720, evm.TU.Scaffold_3_RagTag.721
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-1240
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13793
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-6407
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000019l.778
Rhizophoraceae	Kandelia obovata	1	Maker00012750
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-5245
Salicaceae	Populus euphratica	1	populus_peu24920
Solanaceae	Lycium barbarum	1	gene-LOC132623793
Solanaceae	Solanum chilense	1	SOLCI007409100
Solanaceae	Solanum pennellii	1	gene-LOC107009611