Basic Information
Locus ID:
Ag4G00531
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 20492504 | 20500150 | + | Ag4G00531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 56,899.08 Da | 29.78 | 110.81 | 0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17315 | MFS_GLUT_like | 108 | 526 | 5.36401E-136 | - |
| Pfam | PF00083 | Sugar (and other) transporter | 108 | 537 | 1.1E-102 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 91 | 536 | 1.15E-65 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 95 | 540 | 4.7E-128 | IPR036259 |
| TIGRFAM | TIGR00879 | SP: MFS transporter, sugar porter (SP) family | 96 | 535 | 2.4E-98 | IPR003663 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 105 | 528 | 50.829815 | IPR020846 |
| ProSitePatterns | PS00217 | Sugar transport proteins signature 2. | 203 | 228 | - | IPR005829 |
| PRINTS | PR00171 | Sugar transporter signature | 353 | 363 | 2.0E-25 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 463 | 475 | 2.0E-25 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 440 | 461 | 2.0E-25 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 113 | 123 | 2.0E-25 | IPR003663 |
| PRINTS | PR00171 | Sugar transporter signature | 198 | 217 | 2.0E-25 | IPR003663 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16150.1 | plastidic GLC translocator. Encodes a putative plastidic glucose transporter. | 0 |
| RefSeq | XP_017249683.1 | PREDICTED: plastidic glucose transporter 4-like [Daucus carota subsp. sativus] | 0 |
| Q56ZZ7 | Plastidic glucose transporter 4 OS=Arabidopsis thaliana OX=3702 GN=At5g16150 PE=1 SV=2 | 0 | |
| TrEMBL | A0A162A220 | MFS domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017185 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.791795 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.215628 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.943717 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.616383 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.33349 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.515165 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.086416 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.369297 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.797724 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.016875 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.608284 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.84845 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.261372 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.107048 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.138928 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.431208 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.98445 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.52589 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.396475 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.346444 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.230446 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.719585 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.000739 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.431984 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.699929 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.879863 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.516794 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.602959 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.038151 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.153639 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.134628 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.079087 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.332531 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.061326 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.355446 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.349331 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.268583 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.420579 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.477455 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.165267 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.066679 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.096322 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.473626 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.11178 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.488563 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.707825 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.949659 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39813 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23865 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035501 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g027020 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21617, Sbi_jg22201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16127 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008735 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62677, Sgl67238, Sgl67299 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018547, gene:ENSEOMG00000022066 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0019120, CQ.Regalona.r1.2BG0020790 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30191350 |
| Apiaceae | Apium graveolens | 2 | Ag3G01917, Ag4G00531 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G006170, COCNU_03G008820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103723271, gene-LOC103723589 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.732.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26976, Ftri6G32214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013176m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27990.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g046580.2N, BniB08g007710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0722 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0718 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g09210, gene.Cymno11g01260 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0444s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g01250 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.470 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013925 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01882 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.785, BH02.779, CH02.880 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0057290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0225770.2 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_048893, gene-QYE76_049009, gene-QYE76_049011 |
| Poaceae | Oryza coarctata | 2 | Oco01G001320, Oco02G001340 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g04190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G075900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205552, Pt_Chr0205637 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G024100, Chr03G003700, Chr05G002060, Chr08G001290 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G083100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG003990, gene_TRIDC3BG006320 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G036600.1, TraesCS3B02G047300.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb125210_P003, Zm00001eb335350_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12951, nbis-gene-7042 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7554, Zma_g9916 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.777, evm.TU.LG06.866, evm.TU.LG11.205 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.506 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15426 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15807 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-404 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13799 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3739 |
| Salicaceae | Populus euphratica | 3 | populus_peu09558, populus_peu09564, populus_peu24975 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621267 |
| Solanaceae | Solanum chilense | 1 | SOLCI005341000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011167 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10690 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0691 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11670.v3.1 |