halophFGD

Basic Information

Locus ID: Ag4G00494

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	17611867	17616797	-	Ag4G00494

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.02	40,404.07 Da	45.88	85.88	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13999	STKc_MAP3K-like	44	291	6.83709E-97	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	38	293	1.1E-52	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	28	316	1.25E-71	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	18	306	5.0E-72	-
SMART	SM00220	serkin_6	38	299	4.8E-56	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	38	303	41.474117	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	158	170	-	IPR008271
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	223	245	2.1E-14	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	152	170	2.1E-14	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	114	127	2.1E-14	IPR001245
PRINTS	PR00109	Tyrosine kinase catalytic domain signature	266	288	2.1E-14	IPR001245

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04427 (mitogen-activated protein kinase kinase kinase 7 [EC:2.7.11.25])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) ko04013 (MAPK signaling pathway - fly) map04013 (MAPK signaling pathway - fly) map04064 (NF-kappa B signaling pathway) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04214 (Apoptosis - fly) map04214 (Apoptosis - fly) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04520 (Adherens junction) map04520 (Adherens junction) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) map04622 (RIG-I-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway) map04657 (IL-17 signaling pathway) map04660 (T cell receptor signaling pathway) map04668 (TNF signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G66710.1	Protein kinase superfamily protein.
RefSeq	XP_017251838.1	PREDICTED: serine/threonine-protein kinase HT1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZQ31	Serine/threonine-protein kinase STY13 OS=Arabidopsis thaliana OX=3702 GN=STY13 PE=1 SV=2
TrEMBL	A0A164Y4Z2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017229 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	54.227005	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	49.650604	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	34.084572	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	29.124157	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	33.207497	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.761443	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	34.931187	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.300566	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	5.603741	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.393183	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.846568	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.01751	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.459225	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.408139	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.368663	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.498108	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.174551	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.669249	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	3.707407	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.161565	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.550756	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.211767	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.69866	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.208518	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.347489	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.222979	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.818793	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.381875	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.59912	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.153054		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.331369		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.17753		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.243387		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.34053		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.252089		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.229431		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.264559	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.096027	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.205556	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.494118	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.238833	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	4.565526	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.161813	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.597187	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.888109	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.668694	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.853011	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17762, jg30463, jg3177, jg40400
Aizoaceae	Mesembryanthemum crystallinum	4	gene_13625, gene_17487, gene_20406, gene_24221
Amaranthaceae	Atriplex hortensis	2	Ah000526, Ah031477
Amaranthaceae	Beta vulgaris	2	BVRB_5g118140, BVRB_7g157300
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg2204, Sbi_jg34312, Sbi_jg42038, Sbi_jg48094
Amaranthaceae	Salicornia europaea	2	Seu_jg2570, Seu_jg27452
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005928, GOSA_00014868, GOSA_00023744
Amaranthaceae	Suaeda glauca	3	Sgl55135, Sgl60387, Sgl71061
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007287, gene:ENSEOMG00000007643 ... gene:ENSEOMG00000023056, gene:ENSEOMG00000025852, gene:ENSEOMG00000034190, gene:ENSEOMG00000039231
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0023640, CQ.Regalona.r1.5BG0025130 ... CQ.Regalona.r1.7AG0022670, CQ.Regalona.r1.7BG0025190
Anacardiaceae	Pistacia vera	2	pistato.v30023180, pistato.v30268840
Apiaceae	Apium graveolens	4	Ag4G00493, Ag4G00494, Ag5G02815, Ag9G00445
Arecaceae	Cocos nucifera	3	COCNU_02G013770, COCNU_12G006330, scaffold124783G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695769, gene-LOC103708887, gene-LOC103713421 ... gene-LOC103723155
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.349.V1.1, AsparagusV1_09.1634.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G08882, Ftri17G02307, Ftri18G26635, Ftri18G31314 ... Ftri9G20967
Brassicaceae	Arabidopsis thaliana	7	AT3G27560.1, AT3G50720.1, AT3G50730.1, AT5G01850.1 ... AT5G40540.1, AT5G50180.1, AT5G66710.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10004342m.g.v1.0, Thhalv10004482m.g.v1.0 ... Thhalv10011053m.g.v1.0, Thhalv10013975m.g.v1.0, Thhalv10027816m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp2g16730.v2.2, Sp2g29990.v2.2, Sp5g11520.v2.2 ... Sp6g12270.v2.2, Sp6g41090.v2.2, Sp7g01330.v2.2
Brassicaceae	Brassica nigra	7	BniB01g026040.2N, BniB02g067750.2N, BniB05g031890.2N ... BniB06g015350.2N, BniB07g044140.2N, BniB08g033950.2N, BniB08g064580.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G1897, Ceq02G1899, Ceq05G0741, Ceq08G0898
Casuarinaceae	Casuarina glauca	4	Cgl01G2065, Cgl02G1976, Cgl05G0750, Cgl08G0914
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno03g01840, gene.Cymno08g00900
Dunaliellaceae	Dunaliella salina	1	Dusal.1284s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g08860, gene.Thate09g00620
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10333, nbisL1-mrna-10835, nbisL1-mrna-4877
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.885, evm.TU.LG02.2288, evm.TU.LG02.2289 ... evm.TU.LG05.278, evm.TU.LG10.665
Plantaginaceae	Plantago ovata	4	Pov_00002606, Pov_00024181, Pov_00027838, Pov_00028217
Plumbaginaceae	Limonium bicolor	3	Lb3G18751, Lb4G25560, Lb5G26737
Poaceae	Echinochloa crus-galli	6	AH01.350, AH07.2437, BH01.376, BH07.2250, CH01.227 ... CH07.2321
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0210860, gene-QOZ80_3BG0256070 ... gene-QOZ80_5AG0382570, gene-QOZ80_5BG0429460
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0524710.1, HORVU.MOREX.r3.6HG0590820.1
Poaceae	Lolium multiflorum	2	gene-QYE76_023399, gene-QYE76_060891
Poaceae	Oryza coarctata	4	Oco03G014230, Oco05G027100, Oco06G028010, Oco06G028130
Poaceae	Oryza sativa	2	LOC_Os02g38080.1, LOC_Os03g60150.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G035200, gene-BS78_04G181000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0105720, Pt_Chr0105741, Pt_Chr0204432, Pt_Chr0204489
Poaceae	Sporobolus alterniflorus	8	Chr01G001800, Chr04G022750, Chr04G031330, Chr06G024530 ... Chr07G030340, Chr12G033510, Chr19G012520, Chr27G003420
Poaceae	Thinopyrum elongatum	2	Tel5E01G742700, Tel6E01G409700
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG067100, gene_TRIDC5BG072290 ... gene_TRIDC6AG032280, gene_TRIDC6BG038690
Poaceae	Triticum aestivum	6	TraesCS5A02G469200.1, TraesCS5B02G481700.1 ... TraesCS5D02G482000.1, TraesCS6A02G208500.1, TraesCS6B02G237600.2, TraesCS6D02G192100.1
Poaceae	Zea mays	2	Zm00001eb062230_P001, Zm00001eb183610_P001
Poaceae	Zoysia japonica	2	nbis-gene-16577, nbis-gene-46313
Poaceae	Zoysia macrostachya	3	Zma_g24787, Zma_g2501, Zma_g25527
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2421, evm.TU.LG05.207, evm.TU.LG07.893 ... evm.TU.LG14.1587, evm.TU.LG15.800, evm.TU.LG25.1104
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g08740, gene.Posoc05g02660
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_1_RagTag.1910, evm.TU.Scaffold_2_RagTag.546 ... evm.TU.Scaffold_3_RagTag.1940, evm.TU.Scaffold_6_RagTag.112, evm.TU.Scaffold_6_RagTag.1987
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-14933, nbisL1-mrna-17145, nbisL1-mrna-2417 ... nbisL1-mrna-2558, nbisL1-mrna-4650, nbisL1-mrna-5679
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-2091, nbisL1-mrna-621, nbisL1-mrna-6781 ... nbisL1-mrna-9501
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-102, nbisL1-mrna-11814, nbisL1-mrna-3102 ... nbisL1-mrna-3620, nbisL1-mrna-9643
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000009l.627, evm.TU.utg000011l.1203 ... evm.TU.utg000011l.83, evm.TU.utg000016l.756, evm.TU.utg000019l.54
Rhizophoraceae	Kandelia obovata	5	Maker00001883, Maker00004943, Maker00007816, Maker00007927 ... Maker00016986
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12024, nbisL1-mrna-15574, nbisL1-mrna-2632 ... nbisL1-mrna-4899
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13843, nbisL1-mrna-16623, nbisL1-mrna-17479 ... nbisL1-mrna-3113
Salicaceae	Populus euphratica	3	populus_peu01110, populus_peu24405, populus_peu25278
Solanaceae	Lycium barbarum	3	gene-LOC132621637, gene-LOC132623851, gene-LOC132631044
Solanaceae	Solanum chilense	2	SOLCI003282600, SOLCI004228700
Solanaceae	Solanum pennellii	3	gene-LOC107008646, gene-LOC107010441, gene-LOC107031610
Tamaricaceae	Reaumuria soongarica	3	STRG.1682_chr01_-, gene_11192, gene_957
Tamaricaceae	Tamarix chinensis	2	TC07G1000, TC08G2524
Zosteraceae	Zostera marina	2	Zosma05g08450.v3.1, Zosma06g21490.v3.1