Basic Information
Locus ID:
Ag4G00489
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17380066 | 17385227 | + | Ag4G00489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 60,673.29 Da | 40.85 | 75.61 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 200 | 258 | 4.71E-7 | IPR036047 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07610.1 | F-box family protein. | 0 |
| RefSeq | XP_017252009.1 | PREDICTED: uncharacterized protein LOC108222631 isoform X3 [Daucus carota subsp. sativus] | 0 |
| Q9FLS0 | F-box protein At5g07610 OS=Arabidopsis thaliana OX=3702 GN=At5g07610 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZTK6 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021443 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.251652 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.096945 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.725988 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.356609 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.703901 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.424711 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.155962 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 18.458504 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 81.79052 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 94.757149 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 73.910103 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 46.479298 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 57.841797 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 42.250572 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 51.978916 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 66.99968 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.582632 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 69.03038 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 53.80336 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 120.442924 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 96.020035 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 46.109909 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 49.698612 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 52.045586 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 52.305515 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.264267 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.64308 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 28.442835 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.384338 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.916027 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.31221 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.010393 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 116.891571 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 80.604507 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 149.459946 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 66.601814 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 49.90712 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 55.339447 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.891661 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.711967 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.75032 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 81.431992 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 121.635811 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.097679 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 40.467606 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 86.054001 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 61.019779 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 79.537514 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 34.838856 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.657928 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26011, jg26012, jg31188 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24234, gene_24235 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah016032, Ah026551, Ah026552 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_6g137470, BVRB_6g137480, BVRB_8g192530, BVRB_9g222500 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14738, Sbi_jg5144, Sbi_jg55515 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13133, Seu_jg26066 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00023105, GOSA_00023106, GOSA_00023107, GOSA_00027953 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl34757, Sgl34758, Sgl40128, Sgl40129, Sgl43991, Sgl48760 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000066, gene:ENSEOMG00000002549 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0017760, CQ.Regalona.r1.6BG0018860 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30147680, pistato.v30207720 |
| Apiaceae | Apium graveolens | 7 | Ag10G00023, Ag3G02211, Ag4G00489, Ag7G02002, Ag9G00213 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G001370, scaffold001189G000010 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702702 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2547.V1.1, AsparagusV1_03.678.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G14209, FtriNA18279 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0759 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0769 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2308, evm.TU.LG10.188 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00001721, Pov_00004644, Pov_00012402, Pov_00012412 ... |
| Poaceae | Echinochloa crus-galli | 1 | BH01.556 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213970, gene-QOZ80_3BG0259090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0514220.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco05G025010 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g56500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G063000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0106960 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G029790, Chr07G028860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G646900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG059590, gene_TRIDC5BG063780 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G411600.1.cds1, TraesCS5D02G420400.1.cds1 |
| Poaceae | Zea mays | 4 | Zm00001eb213720_P001, Zm00001eb250170_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16350 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2656 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.306, evm.TU.Scaffold_3_RagTag.272 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-17131, nbisL1-mrna-26555, nbisL1-mrna-26581 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-21188, nbisL1-mrna-3140, nbisL1-mrna-9570 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11803, nbisL1-mrna-17606, nbisL1-mrna-6008 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000001l.88, evm.TU.utg000011l.1213 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004721, Maker00012860 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15586, nbisL1-mrna-6480 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-2304, nbisL1-mrna-2654, nbisL1-mrna-3098 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu14234, populus_peu23555, populus_peu23556 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132622076, gene-LOC132622110, gene-LOC132625247 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000493100, SOLCI000706800, SOLCI000814900 ... |
| Solanaceae | Solanum pennellii | 7 | gene-LOC107009250, gene-LOC107010463, gene-LOC107010556 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2049 |