halophFGD

Basic Information

Locus ID: Ag4G00443

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: D2HGDH

Description: D-2-hydroxyglutarate dehydrogenase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	15365580	15376564	+	Ag4G00443

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.44	56,928.63 Da	37.39	99.56	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01565	FAD binding domain	100	232	4.1E-30	IPR006094
Pfam	PF02913	FAD linked oxidases, C-terminal domain	273	513	2.4E-56	IPR004113
SUPERFAMILY	SSF56176	FAD-binding/transporter-associated domain-like	102	269	4.49E-56	IPR036318
SUPERFAMILY	SSF55103	FAD-linked oxidases, C-terminal domain	274	516	2.78E-51	IPR016164
Gene3D	G3DSA:3.30.465.10	-	99	275	6.1E-57	IPR016169
Gene3D	G3DSA:3.30.70.2740	-	395	473	8.6E-26	-
Gene3D	G3DSA:3.30.70.2190	-	276	393	3.6E-38	-
Gene3D	G3DSA:1.10.45.10	-	474	514	4.2E-13	IPR016171
ProSiteProfiles	PS51387	PCMH-type FAD-binding domain profile.	91	270	21.896276	IPR016166

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity) GO:0016491 (oxidoreductase activity) GO:0050660 (flavin adenine dinucleotide binding) GO:0071949 (FAD binding)

KEGG Pathway

KO Term:

K18204 (D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39])

Best hit

Source	Best Hit ID	Description
TAIR	AT4G36400.1	FAD-linked oxidases family protein. Encodes a (D)-2-hydroxyglutarate dehydrogenase.
RefSeq	XP_017253620.1	PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	O23240	D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=D2HGDH PE=1 SV=3
TrEMBL	A0A5B7C389	FAD-binding PCMH-type domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_044826 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	26.443602	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	28.129969	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	28.951914	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	28.811064	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	30.116062	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	30.400255	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	24.740541	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	19.682508	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	33.488029	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	33.095348	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	35.953003	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	36.476433	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	37.300167	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	29.985529	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	22.875412	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	20.812717	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	18.001324	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	33.52103	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	23.358999	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	30.210287	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	43.089741	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	19.790869	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.804196	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	15.392599	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	17.849138	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	26.280584	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	23.085802	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	30.330452	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	25.707317	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	18.61132		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	21.916271		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	12.672769		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	20.296028		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	15.504675		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	14.575602		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	14.441992		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.69865		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	9.609277		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	18.521664	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	17.754417	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	19.019793	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	17.979208	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	30.74194	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	38.550529	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	43.495026	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	15.107016	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	38.011513	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	24.975338	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	25.22407	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	24.769285	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg33, jg39414
Aizoaceae	Mesembryanthemum crystallinum	1	gene_16800
Amaranthaceae	Atriplex hortensis	1	Ah027657
Amaranthaceae	Beta vulgaris	1	BVRB_6g129540
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg14176, Sbi_jg53432
Amaranthaceae	Salicornia europaea	1	Seu_jg10077
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00025384
Amaranthaceae	Suaeda glauca	2	Sgl34782, Sgl40182
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000002703, gene:ENSEOMG00000027896
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0027330, CQ.Regalona.r1.6BG0028740
Anacardiaceae	Pistacia vera	1	pistato.v30209420
Apiaceae	Apium graveolens	1	Ag4G00443
Arecaceae	Cocos nucifera	1	COCNU_06G013020
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.1999.V1.1, AsparagusV1_03.2108.V1.1
Asteraceae	Flaveria trinervia	1	Ftri6G00935
Brassicaceae	Arabidopsis thaliana	1	AT4G36400.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000690m.g.v1.0, Thhalv10024815m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g34060.v2.2
Brassicaceae	Brassica nigra	3	BniB02g087940.2N, BniB05g002310.2N, BniB08g049200.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0255
Casuarinaceae	Casuarina glauca	1	Cgl06G0281
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g05390
Dunaliellaceae	Dunaliella salina	1	Dusal.0029s00020.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g06040
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.2415
Plantaginaceae	Plantago ovata	1	Pov_00014327
Plumbaginaceae	Limonium bicolor	1	Lb8G36458
Poaceae	Echinochloa crus-galli	3	AH03.450, BH03.546, CH03.633
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_7AG0558680, gene-QOZ80_7BG0589840
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0195930.1
Poaceae	Lolium multiflorum	1	gene-QYE76_042888
Poaceae	Oryza coarctata	2	Oco13G002900, Oco14G003180
Poaceae	Oryza sativa	1	LOC_Os07g08950.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G059800
Poaceae	Sporobolus alterniflorus	2	Chr24G000120, Chr28G002210
Poaceae	Thinopyrum elongatum	1	Tel2E01G775800
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG065280, gene_TRIDC2BG069790
Poaceae	Triticum aestivum	3	TraesCS2A02G457900.2, TraesCS2B02G480200.3 ... TraesCS2D02G458500.2
Poaceae	Zea mays	1	Zm00001eb302200_P006
Poaceae	Zoysia japonica	2	nbis-gene-26772, nbis-gene-57557
Poaceae	Zoysia macrostachya	1	Zma_g6114
Portulacaceae	Portulaca oleracea	2	evm.TU.LG03.1672, evm.TU.LG12.302
Posidoniaceae	Posidonia oceanica	1	gene.Posoc04g11640
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.2063
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17062
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13790
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-11746
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000011l.1257
Rhizophoraceae	Kandelia obovata	1	Maker00007030
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15625
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-3046
Salicaceae	Populus euphratica	1	populus_peu23639
Solanaceae	Lycium barbarum	1	gene-LOC132621298
Solanaceae	Solanum chilense	1	SOLCI004703700
Solanaceae	Solanum pennellii	1	gene-LOC107008794
Tamaricaceae	Tamarix chinensis	1	TC04G0791
Zosteraceae	Zostera marina	1	Zosma03g04780.v3.1