halophFGD

Basic Information

Locus ID: Ag4G00424

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: exonuclease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	14261137	14266063	+	Ag4G00424

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.72	26,790.81 Da	47.91	83.43	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09901	H3TH_FEN1-like	179	226	3.67928E-19	-
CDD	cd09857	PIN_EXO1	12	167	5.43247E-92	IPR044752
Pfam	PF00867	XPG I-region	104	191	1.2E-23	IPR006086
Pfam	PF00752	XPG N-terminal domain	18	63	4.9E-9	IPR006085
SUPERFAMILY	SSF88723	PIN domain-like	15	191	4.21E-49	IPR029060
SUPERFAMILY	SSF47807	5' to 3' exonuclease, C-terminal subdomain	176	223	4.34E-15	IPR036279
Gene3D	G3DSA:1.10.150.20	-	181	235	1.0E-16	-
Gene3D	G3DSA:3.40.50.1010	-	3	180	1.1E-52	-
SMART	SM00279	HhH_4	178	211	3.0E-7	IPR008918
SMART	SM00484	xpgineu	103	173	4.1E-20	IPR006086
ProSitePatterns	PS00841	XPG protein signature 1.	36	50	-	IPR019974
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	38	57	3.7E-26	IPR006084
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	102	119	3.7E-26	IPR006084
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	181	196	3.7E-26	IPR006084
PRINTS	PR00853	Xeroderma pigmentosum group G/yeast RAD superfamily signature	123	143	3.7E-26	IPR006084

Gene Ontology

Molecular Function:

GO:0003677 (DNA binding) GO:0003824 (catalytic activity) GO:0004518 (nuclease activity) GO:0016788 (hydrolase activity, acting on ester bonds) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10746 (exonuclease 1 [EC:3.1.-.-])

Pathway:

ko03430 (Mismatch repair) map03430 (Mismatch repair)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G29630.2	5'-3' exonuclease family protein.
RefSeq	XP_017237062.1	PREDICTED: exonuclease 1 isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q8L6Z7	Exonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=EXO1 PE=2 SV=2
TrEMBL	A0A166IMW1	Exonuclease 1 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_003956 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.387243	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.315126	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.075945	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.024652	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.037229	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.219567	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.416285	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.213799	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.081373	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.852885	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.302261	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.075929	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg20690
Aizoaceae	Mesembryanthemum crystallinum	2	gene_20050, gene_505
Amaranthaceae	Atriplex hortensis	2	Ah002274, Ah016724
Amaranthaceae	Beta vulgaris	1	BVRB_5g111960
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg32200, Sbi_jg40297, Sbi_jg40298, Sbi_jg50288 ... Sbi_jg50289, Sbi_jg57200, Sbi_jg57201
Amaranthaceae	Salicornia europaea	3	Seu_jg1878, Seu_jg1879, Seu_jg24935
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011460, GOSA_00011461, GOSA_00022191
Amaranthaceae	Suaeda glauca	4	Sgl41672, Sgl53980, Sgl59308, Sgl59309
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000011281, gene:ENSEOMG00000020426 ... gene:ENSEOMG00000026564, gene:ENSEOMG00000034657
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0014790, CQ.Regalona.r1.5BG0015830 ... CQ.Regalona.r1.8AG0008230, CQ.Regalona.r1.8BG0008830
Anacardiaceae	Pistacia vera	3	pistato.v30071070, pistato.v30150210, pistato.v30287190
Apiaceae	Apium graveolens	12	Ag10G01426, Ag11G04921, Ag3G01237, Ag3G02197, Ag4G00416 ... Ag4G00424, Ag4G01210, Ag5G00229, Ag7G00855, Ag7G00856, Ag7G00857, AgUnG00035
Arecaceae	Cocos nucifera	2	COCNU_03G009330, COCNU_06G013420
Arecaceae	Phoenix dactylifera	4	gene-LOC103710190, gene-LOC103722980, gene-LOC108510706 ... gene-LOC120113019
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2925.V1.1, AsparagusV1_03.1965.V1.1 ... AsparagusV1_03.1966.V1.1, AsparagusV1_Unassigned.777.V1.1
Asteraceae	Flaveria trinervia	1	Ftri15G08729
Brassicaceae	Arabidopsis thaliana	2	AT1G18090.1, AT1G29630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10006968m.g.v1.0, Thhalv10007197m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g16110.v2.2, Sp1g25530.v2.2
Brassicaceae	Brassica nigra	2	BniB03g007450.2N, BniB03g033970.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2861, Ceq04G0457
Casuarinaceae	Casuarina glauca	2	Cgl03G3009, Cgl04G0557
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g05360, gene.Cymno11g02120
Dunaliellaceae	Dunaliella salina	2	Dusal.0215s00010.v1.0, Dusal.0832s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g12260, gene.Thate09g05980
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4722
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG12.732, evm.TU.LG12.733
Plantaginaceae	Plantago ovata	2	Pov_00004823, Pov_00018645
Plumbaginaceae	Limonium bicolor	4	Lb3G16525, Lb3G19778, Lb3G19807, Lb5G27171
Poaceae	Echinochloa crus-galli	6	AH02.3468, AH05.539, BH02.3484, BH05.590, CH02.3030 ... CH05.674
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0035490, gene-QOZ80_1BG0085630 ... gene-QOZ80_5AG0386810, gene-QOZ80_5BG0434000
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0293210.1, HORVU.MOREX.r3.7HG0712230.1
Poaceae	Lolium multiflorum	4	gene-QYE76_018823, gene-QYE76_027205, gene-QYE76_027206 ... gene-QYE76_056155
Poaceae	Oryza coarctata	2	Oco01G021760, Oco02G022350
Poaceae	Oryza sativa	1	LOC_Os01g56940.1
Poaceae	Paspalum vaginatum	1	gene-BS78_03G295000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0601613, Pt_Chr0702355
Poaceae	Sporobolus alterniflorus	4	Chr02G008110, Chr03G017490, Chr05G025410, Chr08G017420
Poaceae	Thinopyrum elongatum	2	Tel3E01G509200, Tel7E01G589600
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG045920, gene_TRIDC3BG052050 ... gene_TRIDC5BG036800, gene_TRIDC6AG061180, gene_TRIDC7AG047070, gene_TRIDC7BG040640
Poaceae	Triticum aestivum	6	TraesCS3A02G319700.1, TraesCS3B02G346600.1 ... TraesCS3D02G311400.1, TraesCS7A02G335200.1, TraesCS7B02G245900.2, TraesCS7D02G342700.1
Poaceae	Zea mays	1	Zm00001eb151620_P001
Poaceae	Zoysia japonica	3	nbis-gene-12382, nbis-gene-31240, nbis-gene-54145
Poaceae	Zoysia macrostachya	1	Zma_g25682
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2248, evm.TU.LG04.1599, evm.TU.LG10.1310 ... evm.TU.LG10.1311, evm.TU.LG10.1312, evm.TU.LG14.1421
Posidoniaceae	Posidonia oceanica	2	gene.Posoc04g03600, gene.Posoc04g11620
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.435, evm.TU.Scaffold_4_RagTag.714
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28643, nbisL1-mrna-30688
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1766, nbisL1-mrna-3232
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-1652, nbisL1-mrna-22066
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000015l.87, evm.TU.utg000008l.463 ... evm.TU.utg000015l.222
Rhizophoraceae	Kandelia obovata	2	Maker00000162, Maker00015623
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14441, nbisL1-mrna-4129, nbisL1-mrna-4130
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19210, nbisL1-mrna-19211, nbisL1-mrna-22193 ... nbisL1-mrna-24872
Salicaceae	Populus euphratica	2	populus_peu17956, populus_peu28283
Solanaceae	Lycium barbarum	2	gene-LOC132623942, gene-LOC132633238
Solanaceae	Solanum chilense	2	SOLCI000442800, SOLCI004832200
Solanaceae	Solanum pennellii	2	gene-LOC107009082, gene-LOC107012887
Tamaricaceae	Reaumuria soongarica	3	STRG.28176_chr04_+, gene_12651, gene_5806
Tamaricaceae	Tamarix chinensis	2	TC02G2829, TC05G1039
Zosteraceae	Zostera marina	2	Zosma03g01610.v3.1, Zosma06g09840.v3.1