Basic Information
Locus ID:
Ag4G00403
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
CPK18
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 12031927 | 12043269 | - | Ag4G00403 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 62,392.23 Da | 35.32 | 79.78 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 87 | 347 | 1.37927E-123 | - |
| Pfam | PF13499 | EF-hand domain pair | 477 | 529 | 2.4E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 395 | 457 | 2.2E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 88 | 348 | 3.2E-68 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 377 | 531 | 1.65E-32 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 87 | 366 | 1.62E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 82 | 173 | 8.4E-26 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 367 | 458 | 4.4E-41 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 374 | 528 | 4.4E-41 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 174 | 366 | 4.4E-55 | - |
| SMART | SM00220 | serkin_6 | 88 | 348 | 1.9E-91 | IPR000719 |
| SMART | SM00054 | efh_1 | 474 | 502 | 0.88 | IPR002048 |
| SMART | SM00054 | efh_1 | 504 | 532 | 0.0098 | IPR002048 |
| SMART | SM00054 | efh_1 | 395 | 423 | 0.007 | IPR002048 |
| SMART | SM00054 | efh_1 | 432 | 460 | 2.2 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 470 | 505 | 11.305434 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 391 | 426 | 12.504936 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 508 | 535 | 9.910664 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 428 | 463 | 10.050141 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 88 | 348 | 48.569382 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 404 | 416 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 210 | 222 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 513 | 525 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 94 | 118 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 483 | 495 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 441 | 453 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66210.1 | calcium-dependent protein kinase 28. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_017251289.1 | PREDICTED: calcium-dependent protein kinase 28 [Daucus carota subsp. sativus] | 0 |
| Q9FKW4 | Calcium-dependent protein kinase 28 OS=Arabidopsis thaliana OX=3702 GN=CPK28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164XMD8 | Calcium-dependent protein kinase 28-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016603 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 18.361645 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.659426 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.095234 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.148502 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.234032 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.445267 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.710953 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.406768 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 39.914646 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.472088 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.381851 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.063894 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.339157 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.951195 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 69.555473 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 73.902145 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 25.821457 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 111.726364 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 75.808136 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 85.789299 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 79.394424 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 24.262962 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.49262 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 40.424011 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 83.379555 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 22.344688 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.07571 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.701086 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 22.56468 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.820505 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.47788 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.213474 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 35.019474 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.769613 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 42.428322 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 32.003819 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 36.345688 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 39.388584 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.407085 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.020374 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.498753 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 68.407829 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 116.75473 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.9953 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 46.006344 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 52.440887 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 43.777222 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.894543 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 29.05411 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 31.706581 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17210, jg39605 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24109 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026857 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130630 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13703, Sbi_jg52207 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9638 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017658 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33241, Sgl38630, Sgl38691 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000700, gene:ENSEOMG00000001640 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0020130, CQ.Regalona.r1.6BG0021200 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30209960, pistato.v30210060 |
| Apiaceae | Apium graveolens | 3 | Ag4G00403, Ag5G00559, Ag9G00692 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G001710, COCNU_09G001820, COCNU_10G001220 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696863, gene-LOC103703874, gene-LOC103719894 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1457.V1.1, AsparagusV1_04.1240.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri13G29483, Ftri17G19086, Ftri18G19133, Ftri1G26565 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G17890.1, AT4G36070.2, AT5G66210.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003969m.g.v1.0, Thhalv10022615m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g30480.v2.2, Sp7g33850.v2.2, SpUn0281_0010.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g014340.2N, BniB02g087840.2N, BniB03g066180.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0177 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0191 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00130 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4417, nbisL1-mrna-6982 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2767 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020420 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06163, Lb8G36252 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.903, AH07.253, BH03.1035, BH07.318, CH03.1192 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0100290, gene-QOZ80_2BG0153620 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0551960.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019924 |
| Poaceae | Oryza coarctata | 3 | Oco03G001460, Oco04G001360, Oco13G005940 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g03410.1, LOC_Os07g22710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G082000, gene-BS78_04G022100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201281, Pt_Chr0303945 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G035630, Chr24G005890, Chr28G005610 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G435600, Tel6E01G191600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG035040, gene_TRIDC6AG011450 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G239900.1, TraesCS2D02G245700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb094770_P001, Zm00001eb230910_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33822, nbis-gene-38849 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12122, Zma_g6305 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1551, evm.TU.LG05.350, evm.TU.LG12.224 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g07980, gene.Posoc10g10160 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-259 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14318 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5899 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1150 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006806 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6558 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2420 |
| Salicaceae | Populus euphratica | 2 | populus_peu14132, populus_peu23259 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617504, gene-LOC132622177 |
| Solanaceae | Solanum chilense | 2 | SOLCI006618000, SOLCI006856900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009312, gene-LOC107014904 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16503_chr06_+, STRG.8978_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC09G0136, TC11G0728 |
| Zosteraceae | Zostera marina | 3 | Zosma01g26440.v3.1, Zosma03g10680.v3.1, Zosma05g27830.v3.1 |