Basic Information
Locus ID:
Ag4G00393
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
26S proteasome non-atpase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 11806004 | 11811228 | + | Ag4G00393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.35 | 42,660.23 Da | 46.04 | 82.63 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01452 | VWA_26S_proteasome_subunit | 1 | 188 | 3.85367E-108 | - |
| Pfam | PF13519 | von Willebrand factor type A domain | 6 | 116 | 2.3E-26 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 4 | 173 | 8.71E-36 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 3 | 186 | 2.9E-80 | IPR036465 |
| Gene3D | G3DSA:1.10.287.3990 | - | 220 | 337 | 1.1E-18 | - |
| SMART | SM00726 | uim | 323 | 342 | 1.0 | IPR003903 |
| SMART | SM00327 | VWA_4 | 2 | 175 | 5.3E-12 | IPR002035 |
| SMART | SM00726 | uim | 291 | 310 | 28.0 | IPR003903 |
| SMART | SM00726 | uim | 222 | 241 | 0.47 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 323 | 342 | 8.662196 | IPR003903 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 5 | 189 | 11.062948 | IPR002035 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 222 | 241 | 9.753311 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 403 | - | - |
| Coils | Coil | Coil | 232 | 252 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38630.1 | regulatory particle non-ATPase 10. Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities | 0 |
| RefSeq | XP_017253697.1 | PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Daucus carota subsp. sativus] | 0 |
| O82143 | 26S proteasome non-ATPase regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RPN10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A0S3 | VWFA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016595 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 146.681595 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 103.18914 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 114.172005 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 106.54985 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 112.264389 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 98.743073 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 92.02269 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 89.608315 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 183.171814 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 184.622925 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 188.955215 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 195.172058 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 181.886292 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 213.992935 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 121.543068 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 148.621857 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 132.281143 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 157.414062 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 122.468269 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 158.736664 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 162.156998 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 152.981461 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 158.009033 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 175.950256 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 159.702713 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 156.492325 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 149.337616 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 118.401794 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 152.045898 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 92.08239 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 83.653435 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 69.789375 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 121.798378 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 119.047348 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 119.477448 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 94.55645 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 78.333336 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 83.296112 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 107.269821 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 62.272362 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 64.526237 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 227.721222 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 207.233963 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 129.339844 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 124.712433 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 230.484482 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 121.957047 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 155.49826 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 157.044205 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 142.650177 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17219, jg39596 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24120 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026845 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130470 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13725, Sbi_jg52191 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9658 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017536 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33267, Sgl38599, Sgl38657 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002300, gene:ENSEOMG00000003765 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0019950, CQ.Regalona.r1.6BG0021020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30111350, pistato.v30293450 |
| Apiaceae | Apium graveolens | 1 | Ag4G00393 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G002300, COCNU_09G004270, COCNU_10G001630 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103700880, gene-LOC103706166, gene-LOC103720462 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2146.V1.1, AsparagusV1_10.196.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G23254 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025445m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37150.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g089600.2N, BniB03g015690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0159 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0174 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g05970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0070s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g02290 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2779, evm.TU.LG08.297, evm.TU.LG09.226 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020382, Pov_00020407 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06149, Lb3G16965, Lb3G18067 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.2595, AH01.4370, BH01.2918, BH01.2919, CH01.3113 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0240610, gene-QOZ80_3BG0287420 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0392700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069345 |
| Poaceae | Oryza coarctata | 2 | Oco05G007870, Oco06G008170 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g13970.1, LOC_Os10g05180.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G132600, gene-BS78_01G421300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101997 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029160, Chr04G000460, Chr07G000540, Chr12G010330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G394400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG010410, gene_TRIDC4BG040100 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G071300.2, TraesCS4B02G227200.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb010400_P001, Zm00001eb026350_P004 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2310, nbis-gene-3910 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1670, Zma_g4043 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1559, evm.TU.LG05.334, evm.TU.LG12.230 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g09560, gene.Posoc09g06830 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.87, evm.TU.Scaffold_3_RagTag.88 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17006, nbisL1-mrna-5102, nbisL1-mrna-6040 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13359 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3254, nbisL1-mrna-5887, nbisL1-mrna-9366 |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000019l.489, evm.TU.utg000009l.1169 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007619, Maker00016934 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15669, nbisL1-mrna-4630, nbisL1-mrna-6566 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22444, nbisL1-mrna-2991 |
| Salicaceae | Populus euphratica | 3 | populus_peu08723, populus_peu23270, populus_peu36630 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617346, gene-LOC132621678 |
| Solanaceae | Solanum chilense | 1 | SOLCI001430300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011568 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_16257, gene_2859 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31230.v3.1 |