Basic Information
Locus ID:
Ag4G00334
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9738869 | 9743497 | + | Ag4G00334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 54,883.43 Da | 49.36 | 99.58 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 65 | 7.6E-11 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 376 | 473 | 2.0E-9 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 307 | 480 | 6.22E-24 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 194 | 5.67E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 377 | 479 | 4.4E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 303 | 376 | 1.1E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 213 | 2.9E-54 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 315 | 494 | 9.163792 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 321 | 344 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62710.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017249699.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1 [Daucus carota subsp. sativus] | 0 |
| C0LGF4 | LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana OX=3702 GN=FEI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164XKE3 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016532 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.710339 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.154615 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.62163 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.35961 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.611952 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.320521 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.337628 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.208744 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.427044 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.162697 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.320904 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.131002 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.45624 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.194118 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.668629 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.635608 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.167487 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.173599 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.198293 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.943989 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.709776 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.73745 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.551502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.407544 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.996328 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.033997 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.434745 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.400375 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.591982 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.043476 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.173793 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.148967 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.260346 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.038843 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.318485 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.057009 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.049557 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.21632 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.053583 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.04671 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.216667 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.054047 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.21149 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.677463 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.666849 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18643 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19600 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000991 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g115250 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015052 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51118, Sgl56426 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004727 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0021390, CQ.Regalona.r1.5BG0022740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30137820 |
| Apiaceae | Apium graveolens | 4 | Ag2G01048, Ag4G00334, Ag5G00631, AgUnG01281 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012830 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712044, gene-LOC103722252 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1508.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G29501, Ftri1G02047, Ftri9G19821 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G62710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003855m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25880.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g010990.2N, BniB06g011130.2N, BniB07g041770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1826 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g14230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.879 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028932 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26730 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4223, BH05.4315, CH05.4544 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0399640, gene-QOZ80_5BG0448340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0420330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000330 |
| Poaceae | Oryza coarctata | 2 | Oco23G011350, Oco24G011150 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g44090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G169600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704812, Pt_Chr0704883 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G020050, Chr06G021000, Chr07G020690, Chr15G013570 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G013200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG000800, gene_TRIDC5BG000780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G005300.1, TraesCS5B02G004300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb033050_P002, Zm00001eb134100_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44411, nbis-gene-47411 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25418, Zma_g26208 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2598, evm.TU.LG02.841, evm.TU.LG09.2014 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g13680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.935 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14611 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20349 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12508 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.53 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008484 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-807 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8579 |
| Salicaceae | Populus euphratica | 2 | populus_peu29954, populus_peu29965 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632696 |
| Solanaceae | Solanum chilense | 1 | SOLCI006943600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014984 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12602, gene_15961 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0102, TC09G1539 |
| Zosteraceae | Zostera marina | 1 | Zosma03g33550.v3.1 |