halophFGD

Basic Information

Locus ID: Ag4G00297

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: inactive receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	8742925	8745034	+	Ag4G00297

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.69	65,506.03 Da	31.93	91.38	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	328	580	9.8E-20	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	12	50	7.6E-5	IPR013210
Pfam	PF00560	Leucine Rich Repeat	104	126	0.15	IPR001611
SUPERFAMILY	SSF52058	L domain-like	37	211	2.91E-28	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	328	583	4.02E-41	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	400	595	1.2E-34	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	297	398	2.3E-12	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	6	195	2.5E-38	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	324	586	22.237741	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	104	126	7.057395	IPR001611
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	330	352	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26730.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017250585.1	PREDICTED: probable inactive receptor kinase At2g26730 [Daucus carota subsp. sativus]
Swiss-Prot	O48788	Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana OX=3702 GN=At2g26730 PE=1 SV=1
TrEMBL	A0A161YJ22	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016494 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.075012	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.222987	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.089758	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.039694	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.13816	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.035859	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.151882	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.097093	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.341228	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.250933	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.076461	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.211904	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.230582	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.264254	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.595499	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.096501	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.164165	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.09931	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.48808	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.0819	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.302838	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.410261		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.087675	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.070643	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.088396	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.124225	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.091665	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.025373	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13052, jg25818, jg25819, jg40347, jg40348
Anacardiaceae	Pistacia vera	1	pistato.v30138890
Apiaceae	Apium graveolens	5	Ag10G00153, Ag4G00289, Ag4G00297, Ag4G00785, Ag9G00499
Arecaceae	Cocos nucifera	2	COCNU_01G009190, COCNU_05G006690
Arecaceae	Phoenix dactylifera	1	gene-LOC103700918
Asparagaceae	Asparagus officinalis	1	AsparagusV1_05.2324.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G25281, Ftri18G03286, Ftri18G12578, Ftri18G12716 ... Ftri1G32673
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1803, Ceq04G1892
Casuarinaceae	Casuarina glauca	1	Cgl02G1879
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g11620, gene.Thate05g00280
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10309
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.790
Plantaginaceae	Plantago ovata	3	Pov_00022070, Pov_00022071, Pov_00023344
Poaceae	Echinochloa crus-galli	3	AH03.1767, BH03.1919, CH03.2104
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0533950, gene-QOZ80_6BG0486990
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0477560.1
Poaceae	Lolium multiflorum	1	gene-QYE76_004929
Poaceae	Oryza coarctata	1	Oco18G003800
Poaceae	Oryza sativa	2	LOC_Os09g20970.1, LOC_Os10g24850.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G169600
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0702443
Poaceae	Sporobolus alterniflorus	3	Chr10G011030, Chr14G013160, Chr21G012290
Poaceae	Thinopyrum elongatum	3	Tel2E01G954300, Tel2E01G954400, Tel5E01G332300
Poaceae	Triticum dicoccoides	2	gene_TRIDC5AG032100, gene_TRIDC5BG033730
Poaceae	Triticum aestivum	3	TraesCS5A02G198400.1, TraesCS5B02G197100.1 ... TraesCS5D02G204300.1
Poaceae	Zea mays	1	Zm00001eb311540_P001
Poaceae	Zoysia japonica	4	nbis-gene-19938, nbis-gene-30962, nbis-gene-30963 ... nbis-gene-51827
Poaceae	Zoysia macrostachya	2	Zma_g30245, Zma_g32478
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_11_RagTag.992, evm.TU.Scaffold_3_RagTag.1867 ... evm.TU.Scaffold_4_RagTag.494, evm.TU.Scaffold_4_RagTag.495, evm.TU.Scaffold_6_RagTag.186
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14676, nbisL1-mrna-15000, nbisL1-mrna-2309 ... nbisL1-mrna-2643, nbisL1-mrna-28870
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15594, nbisL1-mrna-20383, nbisL1-mrna-475
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12560, nbisL1-mrna-153, nbisL1-mrna-1838 ... nbisL1-mrna-3039, nbisL1-mrna-3040
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000019l.35, evm.TU.utg000010l.93
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11850, nbisL1-mrna-21549
Salicaceae	Populus euphratica	2	populus_peu28608, populus_peu30069
Solanaceae	Lycium barbarum	2	gene-LOC132634233, gene-LOC132643745
Solanaceae	Solanum chilense	2	SOLCI003433400, SOLCI003578500
Solanaceae	Solanum pennellii	2	gene-LOC107004058, gene-LOC107012999