Basic Information
Locus ID:
Ag4G00265
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7890274 | 7894572 | + | Ag4G00265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 120,330.15 Da | 33.30 | 109.20 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 777 | 1048 | 9.33528E-92 | - |
| Pfam | PF00069 | Protein kinase domain | 775 | 1041 | 4.7E-41 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 95 | 154 | 4.4E-11 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 4.5E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 460 | 515 | 7.8E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 375 | 685 | 5.78E-60 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 762 | 1045 | 3.42E-67 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 99 | 454 | 1.88E-64 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 847 | 1072 | 4.8E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 758 | 846 | 2.0E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 201 | 426 | 3.9E-66 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 427 | 693 | 2.9E-76 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 200 | 5.1E-49 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 117 | 143 | 150.0 | - |
| SMART | SM00369 | LRR_typ_2 | 550 | 574 | 21.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 406 | 435 | 180.0 | - |
| SMART | SM00369 | LRR_typ_2 | 117 | 140 | 66.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 503 | 526 | 260.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 478 | 501 | 600.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 262 | 288 | 540.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 526 | 552 | 200.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 502 | 525 | 100.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 623 | 648 | 180.0 | - |
| SMART | SM00369 | LRR_typ_2 | 334 | 358 | 55.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 407 | 430 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 478 | 502 | 110.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 771 | 1054 | 2.4E-21 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 93 | 116 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 165 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 286 | 310 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 646 | 670 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 382 | 406 | 110.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 625 | 647 | 7.196008 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 771 | 1048 | 34.760464 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 892 | 904 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 777 | 799 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56040.2 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_017253433.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540 [Daucus carota subsp. sativus] | 0 |
| F4K6B8 | Leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 OS=Arabidopsis thaliana OX=3702 GN=RGI4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164XIK1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016470 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.314398 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.882738 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.413885 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.286461 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.181886 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.819451 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.023469 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.456144 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.242196 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.163373 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.5147 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.647939 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.683485 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.923194 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.896951 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.766494 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.6243 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.041088 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.271825 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.463438 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.661013 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.975329 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.803663 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.234487 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.574031 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.462252 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.124947 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.609671 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.734024 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.281446 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.143126 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.90609 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.041329 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.410609 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.610075 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.556287 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.979646 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.789657 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.312088 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.98476 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.861908 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.137242 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.501449 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 39.606506 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 44.136631 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.663653 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.975208 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.98512 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.158786 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.820755 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13026, jg20206, jg21635, jg25902 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19496, gene_7116 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000564, Ah009124 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g039770, BVRB_2g039860, BVRB_4g090980, BVRB_5g117660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18585, Sbi_jg30582, Sbi_jg37009, Sbi_jg58671 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28538, Seu_jg4854 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014901, GOSA_00017285 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl13760, Sgl18938, Sgl23613, Sgl28823, Sgl55193, Sgl60443 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000007808, gene:ENSEOMG00000023006 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0000320, CQ.Regalona.r1.4BG0026570 ... |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30139620, pistato.v30151750, pistato.v30151770 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G00504, Ag4G00265 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010720, COCNU_11G006090 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703785, gene-LOC103721265 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2735.V1.1, AsparagusV1_01.525.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G00960, Ftri18G30640, Ftri2G19326 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G26540.1, AT5G56040.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012511m.g.v1.0, Thhalv10024272m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g17860.v2.2, Sp7g24490.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g034820.2N, BniB05g010860.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1528, Ceq04G1975 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1693, Cgl04G2162 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g04500, gene.Cymno01g09700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17550 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2080, evm.TU.LG10.700 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022158, Pov_00037970 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11850 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.502, AH03.2321, AH05.1112, AH08.1917, BH02.520 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0011300, gene-QOZ80_1BG0059960 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0026470.1, HORVU.MOREX.r3.3HG0233780.1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_006034, gene-QYE76_009826, gene-QYE76_009827 ... |
| Poaceae | Oryza coarctata | 6 | Oco02G002850, Oco09G003290, Oco10G003240, Oco15G011930 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g07560.1, LOC_Os05g07740.1, LOC_Os08g38560.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G217900, gene-BS78_03G049900, gene-BS78_K258100 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0200401, Pt_Chr0207400, Pt_Chr0403311, Pt_Chr0501686 ... |
| Poaceae | Sporobolus alterniflorus | 13 | Chr03G005030, Chr05G010600, Chr08G005480, Chr0G015180 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G211400, Tel3E01G162300, Tel5E01G406800 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC1AG014220, gene_TRIDC1BG019950 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS1A02G113800.1, TraesCS1B02G134100.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb101560_P001, Zm00001eb199400_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23539 |
| Poaceae | Zoysia macrostachya | 5 | Zma_g23183, Zma_g24297, Zma_g26515, Zma_g32747, Zma_g7679 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2450, evm.TU.LG02.641, evm.TU.LG09.1803 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08970, gene.Posoc03g20480 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.454, evm.TU.Scaffold_7_RagTag.44 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19712, nbisL1-mrna-28909 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14009, nbisL1-mrna-7941 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1875, nbisL1-mrna-22359 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.103, evm.TU.utg000028l.22 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000018, Maker00001155, Maker00010567 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14615, nbisL1-mrna-7980 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1444, nbisL1-mrna-22567 |
| Salicaceae | Populus euphratica | 6 | populus_peu00052, populus_peu00053, populus_peu17054 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617725, gene-LOC132632619 |
| Solanaceae | Solanum chilense | 2 | SOLCI000499000, SOLCI007106200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014803, gene-LOC107026518 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19992_chr07_+, gene_13070 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2558, TC08G2477 |