Basic Information
Locus ID:
Ag4G00241
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Tetratricopeptide repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 7261106 | 7266753 | - | Ag4G00241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 70,028.75 Da | 44.92 | 88.80 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 356 | 388 | 0.0022 | IPR019734 |
| Pfam | PF14559 | Tetratricopeptide repeat | 243 | 301 | 9.5E-8 | - |
| Pfam | PF13181 | Tetratricopeptide repeat | 142 | 171 | 0.041 | IPR019734 |
| Pfam | PF13424 | Tetratricopeptide repeat | 557 | 617 | 9.1E-9 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 139 | 389 | 1.14E-26 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 348 | 633 | 8.09E-27 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 468 | 556 | 5.5E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 120 | 316 | 3.0E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 324 | 427 | 2.0E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 557 | 635 | 4.1E-18 | IPR011990 |
| SMART | SM00028 | tpr_5 | 519 | 553 | 55.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 589 | 622 | 0.0069 | IPR019734 |
| SMART | SM00028 | tpr_5 | 267 | 300 | 0.31 | IPR019734 |
| SMART | SM00028 | tpr_5 | 233 | 266 | 0.024 | IPR019734 |
| SMART | SM00028 | tpr_5 | 142 | 175 | 2.5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 485 | 518 | 140.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 555 | 588 | 2.1E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 356 | 389 | 0.013 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 356 | 389 | 8.0244 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 589 | 622 | 10.6794 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 555 | 588 | 10.5024 | IPR019734 |
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 589 | 620 | 9.226884 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 233 | 266 | 11.180901 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| Coils | Coil | Coil | 212 | 232 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63200.2 | - | 0 |
| RefSeq | XP_017248916.1 | PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164XHE5 | TPR_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016426 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.544888 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.901483 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 9.508818 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.236616 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.247393 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.436364 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.858485 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.798779 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.812882 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.119585 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.453088 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.510832 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.407516 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.256805 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.759932 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.441945 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.33495 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.061889 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.480108 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.303891 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.666171 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.216944 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.583837 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.223221 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.13655 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.197415 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.361077 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.387221 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.613623 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.424547 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.237062 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.514844 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.15576 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.126497 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 18.570879 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.941688 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.43554 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 9.33756 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.882559 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.310069 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.515943 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.464774 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 20.577745 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.596033 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 25.271265 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.451855 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.930075 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.318987 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.150108 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.642717 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25967 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6569 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028505 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26703, Sbi_jg33859 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15215, Seu_jg24899 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011771 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74014, Sgl77518 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005654, gene:ENSEOMG00000037194 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0008570, CQ.Regalona.r1.9BG0008630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140530 |
| Apiaceae | Apium graveolens | 1 | Ag4G00241 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G001920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712438 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.597.V1.1, AsparagusV1_05.2410.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G32583 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G63200.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003779m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g26330.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g042140.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1911 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03480 |
| Hydrocharitaceae | Thalassia testudinum | 10 | gene.Thate01g14580, gene.Thate01g14590, gene.Thate02g15980 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1010 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019715 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12563, Lb5G26931 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.4262, CH02.4291 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0043590, gene-QOZ80_1BG0093610 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0304640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057188 |
| Poaceae | Oryza coarctata | 2 | Oco01G027730, Oco02G028820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g67920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G372700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600333, Pt_Chr0600377 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G022210, Chr05G031220, Chr08G019790, Chr0G024410 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G619100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055690, gene_TRIDC3BG062350 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G390800.2, TraesCS3B02G422600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb144210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28430 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11756 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1136, evm.TU.LG12.481 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g07230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.404 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28970 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10920 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1917 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.261 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000468 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14646 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1395 |
| Salicaceae | Populus euphratica | 1 | populus_peu30198 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132601759 |
| Solanaceae | Solanum chilense | 1 | SOLCI002887700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021018 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16007 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0905 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15530.v3.1 |