Basic Information
Locus ID:
Ag4G00214
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5739165 | 5741578 | + | Ag4G00214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 49,112.13 Da | 38.50 | 65.74 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02037 | SAP domain | 76 | 110 | 1.0E-7 | IPR003034 |
| Pfam | PF18044 | CCCH-type zinc finger | 406 | 425 | 6.4E-7 | IPR041367 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 401 | 426 | 4.32E-6 | IPR036855 |
| SUPERFAMILY | SSF68906 | SAP domain | 67 | 111 | 3.11E-7 | IPR036361 |
| Gene3D | G3DSA:1.10.720.30 | SAP domain | 67 | 124 | 3.0E-6 | IPR036361 |
| Gene3D | G3DSA:4.10.1000.10 | - | 391 | 427 | 3.3E-6 | - |
| SMART | SM00513 | sap_9 | 76 | 110 | 0.003 | IPR003034 |
| ProSiteProfiles | PS50800 | SAP motif profile. | 76 | 110 | 9.167095 | IPR003034 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 401 | 427 | 15.581776 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 282 | - | - |
| Coils | Coil | Coil | 254 | 274 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66840.1 | SAP domain-containing protein. | 0 |
| RefSeq | XP_017251455.1 | PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q338N2 | Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0391300 PE=4 SV=2 | 0 | |
| TrEMBL | A0A161ZZR4 | SAP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016105 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.20865 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.486399 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.256958 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.593461 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.60308 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.468397 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.860503 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.576063 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.353454 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.252502 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.778316 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.559939 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.542538 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.115715 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.6132 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.240258 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.881846 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.496746 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.78073 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.332059 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.705072 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.442641 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.118132 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.061808 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.111094 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.51942 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.681989 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.31657 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.197212 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.359937 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.182648 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.016126 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.080115 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.100557 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.040646 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.05924 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.374458 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.79862 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.372089 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.665483 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.44385 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.647109 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.720929 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.665314 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.604451 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.924477 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25171, jg40061 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23921, gene_6699 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027382, Ah028742 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g134430, BVRB_7g169630 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12981, Sbi_jg2007, Sbi_jg34496, Sbi_jg52889 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2760, Seu_jg8974 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00002809, GOSA_00010258, GOSA_00010259 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33977, Sgl39374, Sgl73433, Sgl76958 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001526, gene:ENSEOMG00000003453 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0024790, CQ.Regalona.r1.6BG0026200 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30118780, pistato.v30119480 |
| Apiaceae | Apium graveolens | 2 | Ag4G00214, Ag4G01072 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G007000, COCNU_13G002020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701803, gene-LOC103714820, gene-LOC120113292 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G14469, Ftri1G06395 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004096m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29820.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g014880.2N, BniB03g069890.2N, BniB07g044010.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0785 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0798 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g01680, gene.Cymno09g03870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g13270, gene.Thate05g25930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10029, nbisL1-mrna-4604 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023958 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05820, Lb1G05823 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2277, AH03.3719, BH01.2626, BH03.4000, CH01.2793 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2BG0178220, gene-QOZ80_7AG0577500 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0124400.1, HORVU.MOREX.r3.5HG0438120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_031144, gene-QYE76_039466, gene-QYE76_039711 |
| Poaceae | Oryza coarctata | 2 | Oco13G012880, Oco14G013580 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g42760.1, LOC_Os10g25220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G237100, gene-BS78_02G352700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205041, Pt_Chr0205044, Pt_Chr0502389 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G014730, Chr19G002110, Chr24G015100, Chr27G015140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G326600, Tel5E01G139200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG021020, gene_TRIDC2BG024920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G165900.1, TraesCS2B02G191900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109490_P003, Zm00001eb266680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-352 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6870 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.591, evm.TU.LG19.111, evm.TU.LG24.331 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g03590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1442 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6733 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17115 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11885 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1158 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004241, Maker00008319 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15521, nbisL1-mrna-4106 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3192, nbisL1-mrna-8300 |
| Salicaceae | Populus euphratica | 2 | populus_peu14323, populus_peu33812 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621687, gene-LOC132645278 |
| Solanaceae | Solanum chilense | 2 | SOLCI004246900, SOLCI007273500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009297, gene-LOC107021719 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5420_chr03_-, STRG.8762_chr03_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1697, TC11G0497 |
| Zosteraceae | Zostera marina | 2 | Zosma01g10070.v3.1, Zosma06g04630.v3.1 |