Basic Information
Locus ID:
Ag4G00210
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Dormancy/auxin associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5709414 | 5710110 | + | Ag4G00210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.81 | 12,984.32 Da | 91.14 | 67.98 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05564 | Dormancy/auxin associated protein | 7 | 119 | 1.0E-10 | IPR008406 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54070.1 | Dormancy/auxin associated family protein. | 0 |
| RefSeq | XP_017251703.1 | PREDICTED: dormancy-associated protein homolog 4-like [Daucus carota subsp. sativus] | 0 |
| F4HV65 | Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1 | 0 | |
| TrEMBL | A0A164X8Y6 | Auxin-repressed 12.5 kDa protein-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016099 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.145955 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.460295 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.210202 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.216471 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.833566 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.844125 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.448855 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.291714 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.480802 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.517827 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.170594 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.87044 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.2924 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.94628 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.068013 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.687467 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.142733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.126011 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.588147 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.855703 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.287667 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.123582 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.084573 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 31.74231 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.413108 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.868832 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 61.087818 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 319.024078 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 215.573135 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg25163, jg26558, jg27303, jg27306, jg29948 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10395, gene_6691 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005721, Ah028732 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g075930, BVRB_7g169530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17171, Sbi_jg1999, Sbi_jg34505, Sbi_jg61780 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2768, Seu_jg432 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002801, GOSA_00015364 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24452, Sgl29627, Sgl73425, Sgl76950 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007425, gene:ENSEOMG00000008346 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0007930, CQ.Regalona.r1.4BG0008080 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30081400, pistato.v30117620, pistato.v30119570 |
| Apiaceae | Apium graveolens | 4 | Ag1G00526, Ag4G00210, Ag7G01583, Ag9G01045 |
| Arecaceae | Cocos nucifera | 5 | COCNU_01G001730, COCNU_03G004970, COCNU_04G010270 ... |
| Arecaceae | Phoenix dactylifera | 6 | gene-LOC103703317, gene-LOC103703620, gene-LOC103707231 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.941.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G24039, Ftri15G11710, Ftri4G00405 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G54070.1, AT1G56220.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011865m.g.v1.0, Thhalv10029065m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g40510.v2.2, Sp3g12440.v2.2, Sp6g02660.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g050990.2N, BniB04g054900.2N, BniB08g039610.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0777, Ceq06G1161 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0790, Cgl06G1212 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g10950, gene.Cymno04g14110 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g31010, gene.Thate06g07330 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-816, nbisL1-mrna-8240 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.198, evm.TU.LG03.2483 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001978 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06657, Lb4G23068 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.3684, AH03.2046, AH08.1751, BH01.4037, BH03.2367 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_3AG0247770, gene-QOZ80_3BG0280470 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0376000.1, HORVU.MOREX.r3.5HG0480830.2 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005413, gene-QYE76_031281, gene-QYE76_067985 |
| Poaceae | Oryza coarctata | 6 | Oco05G013220, Oco06G013210, Oco15G013400, Oco16G009140 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g22270.1, LOC_Os08g35190.1, LOC_Os09g26620.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G358900, gene-BS78_02G193300 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701974 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G034340, Chr10G009250, Chr12G005270, Chr16G014720 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel4E01G253800, Tel5E01G353000, Tel7E01G180400 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC4AG021640, gene_TRIDC4AG058850 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS4A02G158100.1, TraesCS4A02G386400.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb016420_P001, Zm00001eb040560_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-17115, nbis-gene-19783, nbis-gene-3281 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g23086, Zma_g24162, Zma_g32597, Zma_g3628 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG08.696, evm.TU.LG12.1616, evm.TU.LG18.1264 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g32130, gene.Posoc02g31910 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_18_RagTag.798, evm.TU.Scaffold_2_RagTag.2070 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-27519, nbisL1-mrna-2884, nbisL1-mrna-8172 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14201, nbisL1-mrna-2440, nbisL1-mrna-5147 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13672 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.47, evm.TU.utg000079l.15 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00005990, Maker00011123, Maker00018872 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12992, nbisL1-mrna-19748, nbisL1-mrna-7884 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16142, nbisL1-mrna-22827 |
| Salicaceae | Populus euphratica | 5 | populus_peu02922, populus_peu13349, populus_peu15677 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618135, gene-LOC132645977 |
| Solanaceae | Solanum chilense | 2 | SOLCI001464300, SOLCI007108300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007942, gene-LOC107022629 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.32715_chr09_-, gene_2559 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G0831, TC05G0513 |
| Zosteraceae | Zostera marina | 1 | Zosma03g18590.v3.1 |