halophFGD

Basic Information

Locus ID: Ag4G00201

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	5458963	5460405	+	Ag4G00201

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.26	32,691.44 Da	48.24	86.32	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16461	RING-H2_EL5_like	110	153	5.36042E-19	-
Pfam	PF13639	Ring finger domain	110	153	8.0E-13	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	91	159	6.13E-23	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	73	159	4.9E-19	IPR013083
SMART	SM00184	ring_2	111	152	4.9E-7	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	111	153	12.194218	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	270	291	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	210	232	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	209	233	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	272	291	-	-

KEGG Pathway

KO Term:

K11982 (E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G72310.1	RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3).
RefSeq	XP_017252452.1	PREDICTED: RING-H2 finger protein ATL3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9XF63	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1
TrEMBL	A0A164X8K8	RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016088 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.516368	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.331345	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.308934	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.399827	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.390624	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.018782	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.121174	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.872185	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.454449	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.729802	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.575073	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.344733	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	1.710534	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.485853	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.561789	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.896942	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.064237	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.127729	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.845238	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	13.864543	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	22.532745	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.50551	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.142513	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.292127	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.477431	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.140659	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.566564		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.139901		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.288525		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	19.155191		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.319054		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	39.8475		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.333485		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.046948		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.500771		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.087748	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.104815	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.760187	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	69.76577	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	29.869436	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.995691	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.98669	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	20.965525	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.611753	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	6.855206	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.652576	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.522423	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg12399, jg13281, jg13282, jg13284, jg17962, jg25140, jg5659 ... jg27327, jg28061, jg35161
Aizoaceae	Mesembryanthemum crystallinum	3	gene_4368, gene_5239, gene_6669
Amaranthaceae	Atriplex hortensis	2	Ah012913, Ah028683
Amaranthaceae	Beta vulgaris	1	BVRB_7g169030
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1950, Sbi_jg34559, Sbi_jg59960, Sbi_jg62908
Amaranthaceae	Salicornia europaea	2	Seu_jg23957, Seu_jg2819
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011639, GOSA_00024864
Amaranthaceae	Suaeda glauca	5	Sgl03294, Sgl03578, Sgl08366, Sgl73356, Sgl76888
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007533, gene:ENSEOMG00000013400 ... gene:ENSEOMG00000031319, gene:ENSEOMG00000036418, gene:ENSEOMG00000040433, gene:ENSEOMG00000045029
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0016950, CQ.Regalona.r1.3BG0019350 ... CQ.Regalona.r1.7AG0007100, CQ.Regalona.r1.9BG0007160
Anacardiaceae	Pistacia vera	3	pistato.v30008860, pistato.v30120500, pistato.v30234080
Apiaceae	Apium graveolens	3	Ag1G01985, Ag4G00201, Ag9G01027
Arecaceae	Cocos nucifera	8	COCNU_01G002010, COCNU_04G010430, COCNU_05G007890 ... COCNU_16G003770, COCNU_16G003780, contig69229602G000010, scaffold002830G000020, scaffold032126G000020
Arecaceae	Phoenix dactylifera	7	gene-LOC103696000, gene-LOC103697716, gene-LOC103702656 ... gene-LOC103711456, gene-LOC103714833, gene-LOC103719780, gene-LOC120105687
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.315.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G13719, Ftri1G05630, Ftri7G05446, FtriNA22463
Brassicaceae	Arabidopsis thaliana	8	AT1G53820.1, AT1G72310.1, AT2G47560.1, AT3G14320.1 ... AT3G16720.1, AT3G19140.1, AT3G62690.1, AT4G15975.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10001609m.g.v1.0, Thhalv10006175m.g.v1.0 ... Thhalv10012011m.g.v1.0, Thhalv10018859m.g.v1.0, Thhalv10021205m.g.v1.0, Thhalv10022171m.g.v1.0, Thhalv10025860m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g39290.v2.2, Sp1g40310.v2.2, Sp3g12630.v2.2 ... Sp3g14990.v2.2, Sp3g27200.v2.2, Sp4g29500.v2.2, Sp5g00830.v2.2, Sp5g27380.v2.2, Sp7g14470.v2.2
Brassicaceae	Brassica nigra	17	BniB01g000260.2N, BniB01g047990.2N, BniB01g050780.2N ... BniB01g050790.2N, BniB03g039760.2N, BniB03g050540.2N, BniB05g069740.2N, BniB05g070390.2N, BniB06g026810.2N, BniB06g052340.2N, BniB07g003350.2N, BniB07g021610.2N, BniB07g027660.2N, BniB07g029040.2N, BniB07g053140.2N, BniB08g076660.2N, BniS00512g080.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1095, Ceq06G0989, Ceq09G1111
Casuarinaceae	Casuarina glauca	3	Cgl02G1135, Cgl06G1021, Cgl09G1207
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g03550, gene.Cymno04g11190, gene.Cymno04g13920 ... gene.Cymno04g13930, gene.Cymno04g13950, gene.Cymno05g17780, gene.Cymno09g01800
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g10520, gene.Thate01g30790, gene.Thate05g26130 ... gene.Thate06g04380, gene.Thate07g05650
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-2935, nbisL1-mrna-4644, nbisL1-mrna-836
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.240, evm.TU.LG04.376, evm.TU.LG11.1273
Plantaginaceae	Plantago ovata	2	Pov_00026100, Pov_00028854
Plumbaginaceae	Limonium bicolor	2	Lb3G20905, Lb3G20908
Poaceae	Echinochloa crus-galli	2	AH06.611, CH06.693
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0512020, gene-QOZ80_6BG0463930
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0660720.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_027520
Poaceae	Oryza coarctata	2	Oco11G004300, Oco12G004280
Poaceae	Oryza sativa	1	LOC_Os06g09310.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G072000
Poaceae	Sporobolus alterniflorus	3	Chr11G021090, Chr14G003080, Chr21G002320
Poaceae	Thinopyrum elongatum	2	Tel4E01G305800, Tel7E01G314800
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG019250, gene_TRIDC7BG008900
Poaceae	Triticum aestivum	3	TraesCS7A02G156900.1.cds1, TraesCS7B02G061100.1.cds1 ... TraesCS7D02G157300.1.cds1
Poaceae	Zea mays	1	Zm00001eb374170_P001
Poaceae	Zoysia japonica	3	nbis-gene-3328, nbis-gene-34938, nbis-gene-4961
Poaceae	Zoysia macrostachya	2	Zma_g29260, Zma_g31505
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.103, evm.TU.LG07.1823, evm.TU.LG10.175 ... evm.TU.LG12.1647, evm.TU.LG15.1342
Posidoniaceae	Posidonia oceanica	9	gene.Posoc01g26150, gene.Posoc01g31580, gene.Posoc01g31590 ... gene.Posoc01g31600, gene.Posoc01g31630, gene.Posoc01g31640, gene.Posoc02g07880, gene.Posoc02g27900, gene.Posoc08g03250
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_18_RagTag.811, evm.TU.Scaffold_3_RagTag.606 ... evm.TU.Scaffold_6_RagTag.581
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-16110, nbisL1-mrna-27490, nbisL1-mrna-6720
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12111, nbisL1-mrna-13787, nbisL1-mrna-21088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-476, nbisL1-mrna-6309
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000004l.5, add.evm.TU.utg000011l.142 ... add.evm.TU.utg000019l.357, add.evm.TU.utg000079l.9
Rhizophoraceae	Kandelia obovata	2	Maker00006883, Maker00012559
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-19755, nbisL1-mrna-21607, nbisL1-mrna-22286
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18202, nbisL1-mrna-22813, nbisL1-mrna-3662
Salicaceae	Populus euphratica	6	populus_peu02952, populus_peu02964, populus_peu09316 ... populus_peu22251, populus_peu33848, populus_peu37700
Solanaceae	Lycium barbarum	5	gene-LOC132602408, gene-LOC132608859, gene-LOC132626687 ... gene-LOC132633559, gene-LOC132645198
Solanaceae	Solanum chilense	5	SOLCI000342400, SOLCI002801400, SOLCI004799500 ... SOLCI005627600, SOLCI006749900
Solanaceae	Solanum pennellii	5	gene-LOC107007244, gene-LOC107012094, gene-LOC107015159 ... gene-LOC107022708, gene-LOC107031467
Tamaricaceae	Reaumuria soongarica	3	STRG.21263_chr09_-, gene_7062, gene_9440
Tamaricaceae	Tamarix chinensis	5	TC01G0394, TC05G0587, TC05G0590, TC10G1925, TC12G1668
Zosteraceae	Zostera marina	7	Zosma01g05070.v3.1, Zosma02g18700.v3.1, Zosma02g20200.v3.1 ... Zosma02g23580.v3.1, Zosma03g25290.v3.1, Zosma06g17280.v3.1, Zosma06g21640.v3.1