halophFGD

Basic Information

Locus ID: Ag4G00186

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: phosphatase 2A 55 kDa regulatory subunit B

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	5121633	5129325	+	Ag4G00186

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.56	56,571.99 Da	50.46	70.28	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	219	255	0.22	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	34	500	6.11E-35	IPR036322
Gene3D	G3DSA:2.130.10.10	-	208	506	9.6E-18	IPR015943
Gene3D	G3DSA:2.130.10.10	-	29	194	9.1E-8	IPR015943
SMART	SM00320	WD40_4	26	61	2.8	IPR001680
SMART	SM00320	WD40_4	266	306	14.0	IPR001680
SMART	SM00320	WD40_4	216	255	0.5	IPR001680
SMART	SM00320	WD40_4	390	421	250.0	IPR001680
SMART	SM00320	WD40_4	100	140	9.8	IPR001680
PIRSF	PIRSF037309	PPA2_B55	6	508	1.4E-198	IPR000009
ProSitePatterns	PS01024	Protein phosphatase 2A regulatory subunit PR55 signature 1.	100	114	-	IPR018067
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	255	282	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	116	144	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	283	311	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	227	254	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	87	115	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	340	367	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	368	393	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	477	506	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	40	60	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	312	339	3.3E-158	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	394	420	3.3E-158	IPR000009
MobiDBLite	mobidb-lite	consensus disorder prediction	428	458	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	157	176	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	428	457	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17720.1	Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B
RefSeq	XP_017252625.1	PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1
TrEMBL	A0A1J6JUU0	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Nicotiana attenuata OX=49451 GN=PP2AB2_2 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	15.696119	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	14.660826	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.63765	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	13.680385	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	15.021696	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	16.990149	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.192873	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.11221	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	25.859533	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	28.890911	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	33.218719	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	32.668308	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	30.033323	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	22.100594	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	20.200691	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	18.756083	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.656022	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.09507	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.059814	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	17.363886	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	19.132978	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	17.818636	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	17.847176	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	22.318968	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	16.671715	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.647869	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	17.506424	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	17.264235	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	19.020643	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.730804		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	13.034109		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	13.213371		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	21.446798		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	16.05323		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	13.755586		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	15.507322		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.935983		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.69023		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	13.064635	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.054227	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.906012	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.165827	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	14.438061	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	23.014347	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	28.653759	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	17.31736	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	19.59606	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	15.855301	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.621973	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.796002	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13574, jg18075, jg18764, jg25258
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13182, gene_21265
Amaranthaceae	Atriplex hortensis	2	Ah011387, Ah034602
Amaranthaceae	Beta vulgaris	2	BVRB_2g033360, BVRB_9g211380
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11876, Sbi_jg46797
Amaranthaceae	Salicornia europaea	1	Seu_jg21101
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020959
Amaranthaceae	Suaeda glauca	2	Sgl80203, Sgl82652
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000016771, gene:ENSEOMG00000017072 ... gene:ENSEOMG00000019315, gene:ENSEOMG00000037230, gene:ENSEOMG00000051526, gene:ENSEOMG00000052976
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0014560, CQ.Regalona.r1.2BG0016560 ... CQ.Regalona.r1.9AG0011190, CQ.Regalona.r1.9BG0011270
Anacardiaceae	Pistacia vera	3	pistato.v30116380, pistato.v30139490, pistato.v30254480
Apiaceae	Apium graveolens	5	Ag4G00186, Ag4G00187, Ag5G00697, Ag5G00891, Ag6G01410
Arecaceae	Cocos nucifera	5	COCNU_02G001610, COCNU_03G014860, COCNU_05G010850 ... COCNU_06G005110, COCNU_14G003240
Arecaceae	Phoenix dactylifera	8	gene-LOC103702009, gene-LOC103703801, gene-LOC103709550 ... gene-LOC103711232, gene-LOC103721824, gene-LOC113462214, gene-LOC120107243, gene-LOC120109337
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.295.V1.1, AsparagusV1_05.2915.V1.1 ... AsparagusV1_06.558.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G25207, Ftri13G15029, Ftri18G18631, Ftri1G11803 ... Ftri3G32009, Ftri4G06019, Ftri4G25630, Ftri8G24664
Brassicaceae	Arabidopsis thaliana	2	AT1G17720.1, AT1G51690.3
Brassicaceae	Eutrema salsugineum	3	Thhalv10007406m.g.v1.0, Thhalv10011420m.g.v1.0 ... Thhalv10020527m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15810.v2.2, Sp1g38330.v2.2, Sp3g19300.v2.2
Brassicaceae	Brassica nigra	8	BniB01g042070.2N, BniB03g007210.2N, BniB03g027760.2N ... BniB04g032070.2N, BniB04g058240.2N, BniB06g029070.2N, BniB07g004100.2N, BniB07g049970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0891, Ceq03G1657, Ceq03G2248, Ceq04G1961
Casuarinaceae	Casuarina glauca	3	Cgl02G0904, Cgl03G2385, Cgl04G2148
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g11750, gene.Cymno06g05450, gene.Cymno12g02800 ... gene.Cymno16g03380
Dunaliellaceae	Dunaliella salina	1	Dusal.0038s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g34590, gene.Thate09g07390, gene.Thate09g07950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7468, nbisL1-mrna-794
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.24, evm.TU.LG07.888, evm.TU.LG10.720
Plantaginaceae	Plantago ovata	3	Pov_00015237, Pov_00022145, Pov_00025792
Plumbaginaceae	Limonium bicolor	4	Lb1G05140, Lb2G14900, Lb3G20071, Lb4G26300
Poaceae	Echinochloa crus-galli	9	AH02.2233, AH06.2044, AH07.892, BH02.2336, BH06.1884 ... BH07.1019, CH02.2509, CH06.2065, CH07.773
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0023420, gene-QOZ80_1BG0073940 ... gene-QOZ80_2AG0137550, gene-QOZ80_2BG0193180, gene-QOZ80_6AG0543070, gene-QOZ80_6BG0496290
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0269870.1, HORVU.MOREX.r3.6HG0580090.2 ... HORVU.MOREX.r3.7HG0717590.1
Poaceae	Lolium multiflorum	3	gene-QYE76_021739, gene-QYE76_034512, gene-QYE76_053613
Poaceae	Oryza coarctata	7	Oco01G013920, Oco02G014170, Oco03G005890, Oco04G006120 ... Oco04G016030, Oco11G011280, Oco12G011400
Poaceae	Oryza sativa	3	LOC_Os01g41630.1, LOC_Os02g13110.2, LOC_Os06g36770.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G184700, gene-BS78_04G198300 ... gene-BS78_10G168300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0400470, Pt_Chr0400486, Pt_Chr0603201, Pt_Chr0603229 ... Pt_Chr0605368
Poaceae	Sporobolus alterniflorus	8	Chr02G016220, Chr02G029070, Chr03G010390, Chr05G006690 ... Chr05G017690, Chr08G010610, Chr10G016550, Chr11G005850
Poaceae	Thinopyrum elongatum	3	Tel3E01G370800, Tel6E01G369600, Tel7E01G622500
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG032040, gene_TRIDC3BG036680 ... gene_TRIDC6AG027410, gene_TRIDC6BG033560, gene_TRIDC7AG050180, gene_TRIDC7BG043590
Poaceae	Triticum aestivum	9	TraesCS3A02G214500.2, TraesCS3B02G245100.2 ... TraesCS3D02G217100.1, TraesCS6A02G187800.4, TraesCS6B02G216800.3, TraesCS6D02G178300.6, TraesCS7A02G358700.1, TraesCS7B02G268700.1, TraesCS7D02G364000.2
Poaceae	Zea mays	7	Zm00001eb161320_P002, Zm00001eb205080_P004 ... Zm00001eb243780_P001, Zm00001eb247180_P001, Zm00001eb336600_P001, Zm00001eb357700_P001, Zm00001eb384150_P001
Poaceae	Zoysia japonica	4	nbis-gene-10208, nbis-gene-29332, nbis-gene-29588 ... nbis-gene-9474
Poaceae	Zoysia macrostachya	3	Zma_g10605, Zma_g30709, Zma_g8167
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.2332, evm.TU.LG07.1096, evm.TU.LG07.1615 ... evm.TU.LG07.1616, evm.TU.LG15.1740, evm.TU.LG15.1745
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g19380, gene.Posoc03g21650, gene.Posoc09g06070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1347 ... evm.TU.Scaffold_11_RagTag.1038, evm.TU.Scaffold_18_RagTag.648
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14718, nbisL1-mrna-27761, nbisL1-mrna-7075
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15516, nbisL1-mrna-5019, nbisL1-mrna-8075
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12601, nbisL1-mrna-8030, nbisL1-mrna-8773
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.67, evm.TU.utg000010l.123 ... evm.TU.utg000023l.72
Rhizophoraceae	Kandelia obovata	3	Maker00004088, Maker00008919, Maker00018738
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16447, nbisL1-mrna-734, nbisL1-mrna-7404
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17923, nbisL1-mrna-24322, nbisL1-mrna-8675
Salicaceae	Populus euphratica	6	populus_peu02604, populus_peu04981, populus_peu12674 ... populus_peu28666, populus_peu33506, populus_peu33509
Solanaceae	Lycium barbarum	4	gene-LOC132601443, gene-LOC132603710, gene-LOC132633450 ... gene-LOC132645676
Solanaceae	Solanum chilense	4	SOLCI003840200, SOLCI004096800, SOLCI005557600 ... SOLCI007425100
Solanaceae	Solanum pennellii	4	gene-LOC107007484, gene-LOC107015339, gene-LOC107021207 ... gene-LOC107023835
Tamaricaceae	Reaumuria soongarica	3	gene_10029, gene_3154, gene_3739
Tamaricaceae	Tamarix chinensis	3	TC01G2513, TC08G1710, TC10G2106
Zosteraceae	Zostera marina	4	Zosma05g12250.v3.1, Zosma05g25390.v3.1, Zosma06g00630.v3.1 ... Zosma06g11380.v3.1