halophFGD

Basic Information

Locus ID: Ag4G00136

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	4099467	4100493	-	Ag4G00136

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.22	18,380.95 Da	57.33	75.62	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	67	157	9.0E-36	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	60	151	2.65E-20	-
Gene3D	G3DSA:3.10.20.90	-	64	161	6.4E-36	-
ProSiteProfiles	PS51745	PB1 domain profile.	69	154	22.681633	IPR000270

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G23030.1	indole-3-acetic acid inducible 2. auxin inducible gene expressed in the nucleus
RefSeq	XP_017251410.1	PREDICTED: auxin-responsive protein IAA1-like [Daucus carota subsp. sativus]
Swiss-Prot	P49678	Auxin-responsive protein IAA2 OS=Arabidopsis thaliana OX=3702 GN=IAA2 PE=1 SV=3
TrEMBL	A0A164XCA1	Auxin-responsive protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016231 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	52.582314	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	67.109688	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	92.427368	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	85.236404	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	79.625168	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	44.310387	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	57.124481	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	20.942541	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	20.954597	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	23.183546	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	16.923353	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	14.681828	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	12.250895	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.903528	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	57.500954	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	42.21888	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	16.343533	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.884924	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	59.935802	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	28.358639	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	30.857302	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.108794	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	11.209847	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.215968	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.999831	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.813971	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	25.376272	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.811245	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.987218	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.121648		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.49075		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.426815		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.641019		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.053702		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.318538		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	13.276358		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	15.823958		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	13.993953		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.190666	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.479658	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	14.251648	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.883939	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	6.379153	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.498138	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.151772	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	11.719628	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	39.345844	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.539509	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.06494	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg11125, jg12643, jg16163, jg25380, jg27188, jg27189, jg8735 ... jg27828, jg37840
Aizoaceae	Mesembryanthemum crystallinum	4	gene_11693, gene_11694, gene_19350, gene_26163
Amaranthaceae	Atriplex hortensis	6	Ah000273, Ah006132, Ah006133, Ah006134, Ah010684, Ah010685
Amaranthaceae	Beta vulgaris	4	BVRB_4g082270, BVRB_5g104590, BVRB_5g120300, BVRB_9g220390
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg11485, Sbi_jg16803, Sbi_jg16806, Sbi_jg31556 ... Sbi_jg46415, Sbi_jg57727, Sbi_jg61322, Sbi_jg61324
Amaranthaceae	Salicornia europaea	4	Seu_jg20736, Seu_jg23054, Seu_jg23055, Seu_jg25375
Amaranthaceae	Suaeda aralocaspica	9	GOSA_00005253, GOSA_00008206, GOSA_00008207, GOSA_00008208 ... GOSA_00008209, GOSA_00019481, GOSA_00024682, GOSA_00025843, GOSA_00029228
Amaranthaceae	Suaeda glauca	9	Sgl24838, Sgl24839, Sgl29984, Sgl29985, Sgl54306, Sgl55869 ... Sgl55997, Sgl59650, Sgl61178
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000006929, gene:ENSEOMG00000009766 ... gene:ENSEOMG00000010841, gene:ENSEOMG00000011203, gene:ENSEOMG00000019579, gene:ENSEOMG00000020345, gene:ENSEOMG00000026475, gene:ENSEOMG00000028992, gene:ENSEOMG00000029568, gene:ENSEOMG00000029994, gene:ENSEOMG00000038759, gene:ENSEOMG00000041166, gene:ENSEOMG00000042597, gene:ENSEOMG00000042845, gene:ENSEOMG00000052906
Amaranthaceae	Chenopodium quinoa	10	CQ.Regalona.r1.4AG0010590, CQ.Regalona.r1.4AG0010600 ... CQ.Regalona.r1.4AG0010610, CQ.Regalona.r1.4BG0010810, CQ.Regalona.r1.4BG0010820, CQ.Regalona.r1.4BG0010830, CQ.Regalona.r1.5AG0025610, CQ.Regalona.r1.5BG0027130, CQ.Regalona.r1.7BG0010690, CQ.Regalona.r1.9AG0013920
Anacardiaceae	Pistacia vera	6	pistato.v30026350, pistato.v30126970, pistato.v30126980 ... pistato.v30184400, pistato.v30235720, pistato.v30255980
Apiaceae	Apium graveolens	10	Ag10G00703, Ag1G01813, Ag2G02344, Ag4G00136, Ag4G00137 ... Ag5G02561, Ag8G01540, Ag9G01154, Ag9G01736, Ag9G02083
Arecaceae	Cocos nucifera	4	COCNU_02G000230, COCNU_03G001800, COCNU_06G015050 ... COCNU_14G011800
Arecaceae	Phoenix dactylifera	5	gene-LOC103704407, gene-LOC103704533, gene-LOC103705981 ... gene-LOC103720508, gene-LOC103721010
Asparagaceae	Asparagus officinalis	7	AsparagusV1_03.3028.V1.1, AsparagusV1_03.582.V1.1 ... AsparagusV1_06.1943.V1.1, AsparagusV1_07.2576.V1.1, AsparagusV1_07.3197.V1.1, AsparagusV1_08.2042.V1.1, AsparagusV1_08.642.V1.1
Asteraceae	Flaveria trinervia	12	Ftri10G02327, Ftri12G12220, Ftri15G05652, Ftri18G06468 ... Ftri18G08799, Ftri18G22483, Ftri1G01589, Ftri1G24079, Ftri8G09746, Ftri8G31056, Ftri9G13988, Ftri9G15987
Brassicaceae	Arabidopsis thaliana	8	AT1G04240.1, AT1G15580.1, AT1G52830.1, AT1G80390.1 ... AT3G15540.1, AT3G23030.1, AT4G14560.1, AT5G43700.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10003276m.g.v1.0, Thhalv10008636m.g.v1.0 ... Thhalv10012354m.g.v1.0, Thhalv10019723m.g.v1.0, Thhalv10021556m.g.v1.0, Thhalv10021641m.g.v1.0, Thhalv10026385m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g03050.v2.2, Sp1g13950.v2.2, Sp1g39420.v2.2 ... Sp2g08490.v2.2, Sp3g13810.v2.2, Sp3g20710.v2.2, Sp5g35420.v2.2, Sp7g12650.v2.2
Brassicaceae	Brassica nigra	14	BniB01g039230.2N, BniB01g049370.2N, BniB02g001600.2N ... BniB03g024980.2N, BniB03g026360.2N, BniB04g012970.2N, BniB04g017520.2N, BniB04g056820.2N, BniB06g046640.2N, BniB06g068540.2N, BniB07g020240.2N, BniB07g028320.2N, BniB07g048870.2N, BniB07g054140.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G0235, Ceq06G1392, Ceq07G0380, Ceq07G1240, Ceq08G2221
Casuarinaceae	Casuarina glauca	3	Cgl02G0256, Cgl07G0392, Cgl08G2374
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g01300, gene.Cymno06g12840, gene.Cymno12g00360
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g32970, gene.Thate02g40880, gene.Thate03g20010 ... gene.Thate07g14490, gene.Thate08g10950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-12086, nbisL1-mrna-5001, nbisL1-mrna-6330
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.392, evm.TU.LG01.393, evm.TU.LG03.2257 ... evm.TU.LG04.1188, evm.TU.LG07.1028, evm.TU.LG11.908
Plantaginaceae	Plantago ovata	4	Pov_00007916, Pov_00015441, Pov_00015443, Pov_00024673
Plumbaginaceae	Limonium bicolor	7	Lb0G37175, Lb1G06945, Lb1G07954, Lb2G10316, Lb4G22668 ... Lb4G23912, Lb5G28968
Poaceae	Echinochloa crus-galli	20	AH01.1212, AH01.223, AH02.437, AH03.418, AH05.1143, BH01.524 ... AH05.3970, AH06.2185, AH06.2187, BH02.454, BH03.509, BH05.1348, BH05.4064, CH01.1437, CH01.380, CH02.501, CH03.598, CH04.2219, CH05.4271, CH06.2216
Poaceae	Eleusine coracana subsp. coracana	16	gene-QOZ80_1AG0011990, gene-QOZ80_1BG0060570 ... gene-QOZ80_3AG0212410, gene-QOZ80_3AG0225040, gene-QOZ80_3BG0257620, gene-QOZ80_3BG0270300, gene-QOZ80_5AG0396900, gene-QOZ80_5AG0402820, gene-QOZ80_5AG0402840, gene-QOZ80_5BG0445390, gene-QOZ80_5BG0451310, gene-QOZ80_6AG0544070, gene-QOZ80_6BG0497520, gene-QOZ80_7AG0558390, gene-QOZ80_7BG0589570, gene-QOZ80_UnG0727940
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0027200.1, HORVU.MOREX.r3.1HG0082640.1 ... HORVU.MOREX.r3.3HG0239900.1, HORVU.MOREX.r3.5HG0433440.1, HORVU.MOREX.r3.5HG0509090.1, HORVU.MOREX.r3.5HG0519690.1, HORVU.MOREX.r3.7HG0714400.1
Poaceae	Lolium multiflorum	9	gene-QYE76_000678, gene-QYE76_000681, gene-QYE76_009739 ... gene-QYE76_010026, gene-QYE76_032536, gene-QYE76_034879, gene-QYE76_042860, gene-QYE76_061216, gene-QYE76_062928
Poaceae	Oryza coarctata	14	Oco01G003280, Oco05G018550, Oco05G026110, Oco06G019320 ... Oco06G027010, Oco09G003530, Oco09G005130, Oco10G003520, Oco11G012110, Oco12G012270, Oco13G002630, Oco14G002930, Oco23G009910, Oco24G009590
Poaceae	Oryza sativa	7	LOC_Os01g08320.1, LOC_Os03g43410.1, LOC_Os03g58350.1 ... LOC_Os05g08570.1, LOC_Os06g39590.1, LOC_Os07g08460.1, LOC_Os12g40900.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G050000, gene-BS78_01G148600 ... gene-BS78_02G057300, gene-BS78_03G042000, gene-BS78_08G135900, gene-BS78_09G070300, gene-BS78_10G180800
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0104449, Pt_Chr0105410, Pt_Chr0105493, Pt_Chr0200290 ... Pt_Chr0303715, Pt_Chr0303718, Pt_Chr0400609, Pt_Chr0501631, Pt_Chr0501644, Pt_Chr0502774, Pt_Chr0704301
Poaceae	Sporobolus alterniflorus	19	Chr01G002730, Chr01G009800, Chr01G011540, Chr02G020110 ... Chr02G029600, Chr03G005580, Chr04G018590, Chr05G007250, Chr05G011010, Chr06G019370, Chr07G029520, Chr08G006030, Chr12G027200, Chr12G034600, Chr18G000020, Chr19G008030, Chr22G014010, Chr27G008630, Chr28G002060
Poaceae	Thinopyrum elongatum	6	Tel1E01G218900, Tel3E01G209200, Tel5E01G125700 ... Tel5E01G602100, Tel5E01G691800, Tel7E01G603900
Poaceae	Triticum dicoccoides	13	gene_TRIDC1AG013630, gene_TRIDC1BG020760 ... gene_TRIDC3AG015130, gene_TRIDC3BG019700, gene_TRIDC5AG008910, gene_TRIDC5AG055310, gene_TRIDC5AG063450, gene_TRIDC5BG009690, gene_TRIDC5BG059330, gene_TRIDC5BG059350, gene_TRIDC5BG067960, gene_TRIDC7AG051940, gene_TRIDC7BG041950
Poaceae	Triticum aestivum	17	TraesCS1A02G118400.2, TraesCS1B02G138100.1 ... TraesCS1D02G119500.1, TraesCS3A02G121300.2, TraesCS3B02G140700.1, TraesCS3D02G123400.1, TraesCS5A02G058700.1, TraesCS5A02G378200.1, TraesCS5B02G058800.1, TraesCS5B02G381800.1, TraesCS5B02G446100.1, TraesCS5D02G069200.1, TraesCS5D02G388200.1, TraesCS5D02G449400.1, TraesCS7A02G371500.1, TraesCS7B02G256100.1, TraesCS7D02G351400.1
Poaceae	Zea mays	8	Zm00001eb031190_P003, Zm00001eb051060_P001 ... Zm00001eb060950_P002, Zm00001eb122410_P001, Zm00001eb135570_P001, Zm00001eb212890_P001, Zm00001eb218860_P001, Zm00001eb301590_P001
Poaceae	Zoysia japonica	13	nbis-gene-10124, nbis-gene-13199, nbis-gene-15358 ... nbis-gene-16473, nbis-gene-20405, nbis-gene-23573, nbis-gene-26796, nbis-gene-35645, nbis-gene-39667, nbis-gene-41100, nbis-gene-44585, nbis-gene-47575, nbis-gene-6800
Poaceae	Zoysia macrostachya	13	Zma_g10066, Zma_g25293, Zma_g2576, Zma_g26086, Zma_g26532 ... Zma_g282, Zma_g30764, Zma_g3229, Zma_g33011, Zma_g4824, Zma_g6101, Zma_g7724, Zma_g908
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2867, evm.TU.LG02.1144, evm.TU.LG06.1191 ... evm.TU.LG06.1192, evm.TU.LG07.1721, evm.TU.LG08.523, evm.TU.LG09.829, evm.TU.LG11.549, evm.TU.LG22.1550, evm.TU.LG22.1551
Posidoniaceae	Posidonia oceanica	4	gene.Posoc03g02700, gene.Posoc03g24490, gene.Posoc08g15440 ... gene.Posoc09g11700
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.1245, evm.TU.Scaffold_1_RagTag.279 ... evm.TU.Scaffold_3_RagTag.373, evm.TU.Scaffold_5_RagTag.1056, evm.TU.Scaffold_6_RagTag.816
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-11297, nbisL1-mrna-1552, nbisL1-mrna-15870 ... nbisL1-mrna-27844, nbisL1-mrna-3361, nbisL1-mrna-6894, nbisL1-mrna-6957, nbisL1-mrna-7920
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10681, nbisL1-mrna-17103, nbisL1-mrna-17360 ... nbisL1-mrna-19000, nbisL1-mrna-7609
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10333, nbisL1-mrna-16998, nbisL1-mrna-5338 ... nbisL1-mrna-6112, nbisL1-mrna-692
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000004l.374, evm.TU.utg000006l.350 ... evm.TU.utg000011l.504, evm.TU.utg000012l.189, evm.TU.utg000019l.1002
Rhizophoraceae	Kandelia obovata	5	Maker00004129, Maker00007359, Maker00011048, Maker00012608 ... Maker00012959
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-15256, nbisL1-mrna-16376, nbisL1-mrna-6403 ... nbisL1-mrna-7771, nbisL1-mrna-9937
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-18031, nbisL1-mrna-19763, nbisL1-mrna-21242 ... nbisL1-mrna-2189, nbisL1-mrna-254, nbisL1-mrna-4223
Salicaceae	Populus euphratica	9	populus_peu02796, populus_peu07467, populus_peu13585 ... populus_peu15126, populus_peu15927, populus_peu21479, populus_peu32788, populus_peu33716, populus_peu37058
Solanaceae	Lycium barbarum	8	gene-LOC132598510, gene-LOC132602370, gene-LOC132604923 ... gene-LOC132607953, gene-LOC132610499, gene-LOC132618705, gene-LOC132633356, gene-LOC132642611
Solanaceae	Solanum chilense	7	SOLCI000980000, SOLCI001138400, SOLCI002281300 ... SOLCI002322300, SOLCI002322400, SOLCI005451800, SOLCI007522000
Solanaceae	Solanum pennellii	9	gene-LOC107012943, gene-LOC107015399, gene-LOC107015632 ... gene-LOC107021028, gene-LOC107021292, gene-LOC107022060, gene-LOC107022782, gene-LOC107029221, gene-LOC107031598
Tamaricaceae	Reaumuria soongarica	6	STRG.14871_chr08_+, STRG.17640_chr09_+, STRG.28468_chr04_+ ... gene_10913, gene_4887, gene_4889
Tamaricaceae	Tamarix chinensis	5	TC02G3468, TC05G1187, TC07G2313, TC08G2098, TC08G2099
Zosteraceae	Zostera marina	5	Zosma01g05970.v3.1, Zosma01g08410.v3.1, Zosma05g32570.v3.1 ... Zosma06g12240.v3.1, Zosma06g24030.v3.1