Basic Information
Locus ID:
Ag4G00092
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3232046 | 3237189 | + | Ag4G00092 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 63,419.59 Da | 38.10 | 110.78 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 4 | 46 | 5.4E-5 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 379 | 402 | 0.26 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 455 | 477 | 0.03 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 107 | 346 | 3.14E-24 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 297 | 521 | 6.87E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 316 | 448 | 7.9E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 449 | 544 | 1.6E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2 | 315 | 1.4E-26 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 455 | 479 | 360.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 253 | 277 | 48.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 405 | 16.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 406 | 431 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 278 | 303 | 94.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 179 | 204 | 4.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 432 | 452 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 304 | 329 | 75.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80630.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017251317.1 | PREDICTED: F-box/LRR-repeat protein 2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164XDT1 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016288 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.618048 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.746964 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.700706 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.352948 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.011786 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.46519 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.718685 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.065368 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.177338 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.878993 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.523959 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.285848 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.507563 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.09608 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 4.785168 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.865282 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.239294 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.686839 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.931019 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.903503 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.1727 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.458138 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.93615 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.650188 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.104196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.463149 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.395961 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.738982 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.008162 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.87993 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.886785 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.737457 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.519813 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.168121 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.746824 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.56813 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.974202 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.425118 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.24694 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.069254 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.482424 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.894289 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.090331 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.300529 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 8.255077 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.193442 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.322445 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.675747 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.976471 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.818898 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 19 | gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_7g160670, BVRB_9g218820, BVRB_9g218830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24776, Sbi_jg8641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19963 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl56011, Sgl60655, Sgl61204 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... |
| Amaranthaceae | Chenopodium quinoa | 16 | CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... |
| Apiaceae | Apium graveolens | 1 | Ag4G00092 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G24598 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80630.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018340m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g068330.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.792 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.57916.3, evm.TU.57917.3 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6695 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12271, nbisL1-mrna-12272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17128 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20704 |
| Salicaceae | Populus euphratica | 1 | populus_peu34905 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI003651800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013683 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19304_chr07_+, STRG.19306_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2295, TC08G2298 |