Basic Information
Locus ID:
Ag4G00048
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
IPK2
Description:
Inositol phosphate kinase with a broad substrate specificity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1963879 | 1965905 | + | Ag4G00048 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 31,437.42 Da | 42.12 | 86.53 | -0.15 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Reaction:
R03478 (ATP + 1D-myo-Inositol 1,3,4,6-tetrakisphosphate <=> ADP + 1D-myo-Inositol 1,3,4,5,6-pentakisphosphate)
R05800 (ATP + D-myo-Inositol 1,4,5-trisphosphate <=> ADP + 1D-myo-Inositol 1,4,5,6-tetrakisphosphate)
R05801 (ATP + 1D-myo-Inositol 1,4,5,6-tetrakisphosphate <=> ADP + 1D-myo-Inositol 1,3,4,5,6-pentakisphosphate)
R10065 (2 ATP + D-myo-Inositol 1,4,5-trisphosphate <=> 2 ADP + 1D-myo-Inositol 1,3,4,5,6-pentakisphosphate)
R10953 (ATP + 1D-myo-Inositol 1,3,4,5-tetrakisphosphate <=> ADP + 1D-myo-Inositol 1,3,4,5,6-pentakisphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61760.1 | inositol polyphosphate kinase 2 beta. Encodes an inositol polyphosphate 3-/6-/5-kinase that is localized to the nucleus. Able to complement a mutation in a yeast transcriptional regulator gene (ARG82/IPK2). | 0 |
| RefSeq | XP_017250222.1 | PREDICTED: inositol polyphosphate multikinase beta [Daucus carota subsp. sativus] | 0 |
| Q9FLT2 | Inositol polyphosphate multikinase beta OS=Arabidopsis thaliana OX=3702 GN=IPK2b PE=1 SV=1 | 0 | |
| TrEMBL | A0A164XEV4 | Inositol polyphosphate multikinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016326 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.894444 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.132118 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.90796 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.608708 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.298868 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.73258 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.691985 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.434113 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.174753 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.944237 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.408428 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.050817 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.764437 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.295139 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.177853 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 35.944324 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 65.495461 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 64.022736 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 44.734032 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 67.014061 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 60.052849 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 140.832123 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 143.587494 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 198.592224 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 119.714859 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 94.007301 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 100.737312 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 69.907516 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 93.20359 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.166248 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.955721 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.275463 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.900965 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 29.917603 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.732132 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 21.042145 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.600859 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.295004 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 25.093033 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.670204 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.797162 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 59.090321 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 61.23634 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 173.036957 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 188.594696 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 66.026161 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 233.502747 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.662342 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.155247 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.957874 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18345, jg18347 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25109 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028212, Ah031800 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g044190, BVRB_2g044200, BVRB_7g167010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19284, Sbi_jg43846 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18070 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00003465, GOSA_00003467, GOSA_00003468, GOSA_00014560 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl65668, Sgl69984, Sgl73780, Sgl73820, Sgl77285 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008305, gene:ENSEOMG00000016060 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0001150, CQ.Regalona.r1.2BG0002220 ... |
| Apiaceae | Apium graveolens | 2 | Ag4G00048, Ag9G01216 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G016080, COCNU_02G016090, COCNU_15G006210 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103712359, gene-LOC103720079, gene-LOC120111460 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri1G26471, Ftri9G19397 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G07370.2, AT5G61760.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004707m.g.v1.0, Thhalv10013933m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g24960.v2.2, Sp6g35500.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g053520.2N, BniB02g068040.2N, BniB02g075550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1984 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2170 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g13700 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0011s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g12060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11461 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.527 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020050, Pov_00026879 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00034, Lb5G29326 |
| Poaceae | Echinochloa crus-galli | 1 | BH07.1950 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0132440, gene-QOZ80_2BG0187850 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0728860.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_022638 |
| Poaceae | Oryza coarctata | 2 | Oco03G011300, Oco04G011690 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g32370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G147800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505422, Pt_Chr0505445 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G010860, Chr09G015530, Chr13G011430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G709000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG059530, gene_TRIDC7BG052460 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G427500.1.cds1, TraesCS7B02G327600.1.cds1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb049690_P001, Zm00001eb076370_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18932 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16390 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2570, evm.TU.LG17.1612 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g00200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1216, evm.TU.Scaffold_4_RagTag.283 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29071 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18650, nbisL1-mrna-6893 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12781 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.62, add.evm.TU.utg000010l.97 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001201, Maker00008719 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17003, nbisL1-mrna-17690 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8853 |
| Salicaceae | Populus euphratica | 2 | populus_peu28990, populus_peu30397 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603610, gene-LOC132633128 |
| Solanaceae | Solanum chilense | 2 | SOLCI005027300, SOLCI006427800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007208, gene-LOC107012961 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1057_chr01_-, STRG.1322_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1766 |
| Zosteraceae | Zostera marina | 1 | Zosma01g12090.v3.1 |