Basic Information
Locus ID:
Ag4G00009
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBC27
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 472408 | 476907 | - | Ag4G00009 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 21,231.01 Da | 43.67 | 90.98 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14312 | UBA_II_E2_UBC27_like | 158 | 193 | 2.03237E-15 | IPR041974 |
| CDD | cd00195 | UBCc | 6 | 146 | 1.04632E-62 | IPR000608 |
| Pfam | PF00627 | UBA/TS-N domain | 158 | 191 | 5.9E-9 | IPR015940 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 6 | 145 | 7.2E-43 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 151 | 8.98E-51 | IPR016135 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 194 | 1.46E-8 | IPR009060 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 153 | 4.3E-56 | IPR016135 |
| Gene3D | G3DSA:1.10.8.10 | - | 157 | 194 | 6.7E-9 | - |
| SMART | SM00165 | uba_6 | 157 | 194 | 2.4E-9 | IPR015940 |
| SMART | SM00212 | ubc_7 | 5 | 151 | 6.7E-63 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 2 | 151 | 48.103313 | IPR000608 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 156 | 194 | 12.233631 | IPR015940 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 77 | 93 | - | IPR023313 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50870.1 | ubiquitin-conjugating enzyme 27. | 0 |
| RefSeq | XP_017249357.1 | PREDICTED: ubiquitin-conjugating enzyme E2 27 [Daucus carota subsp. sativus] | 0 |
| Q9FI61 | Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana OX=3702 GN=UBC27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XFM4 | E2 ubiquitin-conjugating enzyme OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 105.236618 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 97.073433 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 77.475319 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 80.067314 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 76.105797 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 59.968399 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 54.870964 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 44.097225 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 65.791275 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 65.288254 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 66.574654 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 66.314705 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 74.818863 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 74.135925 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 49.528862 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 44.227066 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 51.928596 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 37.403488 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 37.009293 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 31.725487 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.032448 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 60.939617 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 55.688881 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 60.604191 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 59.889526 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 41.007656 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 41.878143 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 42.964146 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.951717 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 34.132446 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 34.070618 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 33.92556 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 38.043953 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 75.402184 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 43.758831 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 36.980793 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 44.035378 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 40.769775 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.377365 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.217413 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 32.076332 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.5252 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.698877 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.38171 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 39.686203 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 31.194361 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 36.849674 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 96.104691 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 89.877808 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 94.33757 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13401 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19784 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001620 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30805, Sbi_jg58462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28333 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004906, GOSA_00004907 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53733, Sgl58997 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004306, gene:ENSEOMG00000024112 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0017630, CQ.Regalona.r1.5BG0018800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30012330 |
| Apiaceae | Apium graveolens | 1 | Ag4G00009 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G009350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715319 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1523.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G03097, Ftri1G31712, Ftri3G13043 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50870.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014747m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g018350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1977 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2138 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g05460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0002s00027.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.588 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033529 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27082 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4376, BH02.4409, CH02.4459 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0045030, gene-QOZ80_1BG0095060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0311810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057537 |
| Poaceae | Oryza coarctata | 2 | Oco01G028900, Oco02G030000 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G388300, gene-BS78_K099300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0405455, Pt_Chr0600584, Pt_Chr0602602 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002120, Chr03G023170, Chr05G032360, Chr08G018910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G695200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG062180, gene_TRIDC3BG069760 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G439400.2, TraesCS3B02G473300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb363890_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10936, nbis-gene-28285 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11844, Zma_g9302 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2759, evm.TU.LG02.180, evm.TU.LG09.1419 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g13680 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1169, evm.TU.Scaffold_4_RagTag.320 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12365, nbisL1-mrna-12478 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18684, nbisL1-mrna-6922 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12744, nbisL1-mrna-1986 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.203, evm.TU.utg000010l.232 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000177, Maker00008542 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14704, nbisL1-mrna-633 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1325, nbisL1-mrna-8817 |
| Salicaceae | Populus euphratica | 2 | populus_peu28923, populus_peu30317 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021000 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15827_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0779 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09430.v3.1 |