Basic Information
Locus ID:
Ag3G02853
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 297408155 | 297413738 | - | Ag3G02853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 47,955.83 Da | 56.11 | 70.28 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 148 | 274 | 1.73E-19 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 139 | 233 | 7.4E-26 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 148 | 434 | 9.47474 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 154 | 185 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03940.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_017247425.1 | PREDICTED: uncharacterized protein LOC108218816 [Daucus carota subsp. sativus] | 0 |
| Q852L0 | Casein kinase 1-like protein HD16 OS=Oryza sativa subsp. japonica OX=39947 GN=HD16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162ACT5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013688 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 68.660477 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 64.852707 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 84.334137 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 88.194 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 75.538559 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 101.073547 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 74.073425 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 131.80072 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.772926 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 53.323151 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 52.802776 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 46.966705 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 57.409184 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 54.11729 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 56.781971 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 48.161266 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 48.893303 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 115.44413 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 68.427032 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 92.695686 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 113.734016 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 42.895836 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.865906 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 45.462818 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 51.951504 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 98.331635 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 86.60096 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 82.094788 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 88.145592 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.812 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 32.010357 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.397432 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 104.838036 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 51.141869 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 105.477821 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 102.555527 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 41.335205 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 55.785145 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.216331 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 52.965897 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 90.231827 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 84.404076 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 105.651665 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 111.780586 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 124.814461 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 70.753372 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 126.751167 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.41407 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.392483 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 37.249935 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11317 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19283 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000050458 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0015870 |
| Apiaceae | Apium graveolens | 7 | Ag10G01019, Ag2G01421, Ag3G02853, Ag5G02644, Ag7G00328 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G03930.1 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006816 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0013370, gene-QOZ80_1AG0035100 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061267 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G675600, Tel5E01G676300 |
| Poaceae | Zea mays | 3 | Zm00001eb068790_P001, Zm00001eb146020_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31212 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-2944 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13148, nbisL1-mrna-15291 |
| Solanaceae | Solanum chilense | 1 | SOLCI004132400 |
| Zosteraceae | Zostera marina | 2 | Zosma05g13380.v3.1, Zosma05g13390.v3.1 |