Basic Information
Locus ID:
Ag3G02840
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Plant organelle RNA recognition domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 297313621 | 297315097 | + | Ag3G02840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 49,766.80 Da | 42.84 | 80.30 | -0.49 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58520.1 | Ubiquitin carboxyl-terminal hydrolase family protein. | 0 |
| RefSeq | XP_017247368.1 | PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Daucus carota subsp. sativus] | 0 |
| Q9ZUZ6 | Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1 | 0 | |
| TrEMBL | A0A164X6F8 | PORR domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.679883 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.594989 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.223575 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.817527 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.237225 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.815374 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.543203 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.147459 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.986098 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.558744 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.411208 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.712683 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.356003 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.518446 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.059867 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.100954 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.061875 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.065214 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.049531 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.529169 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.807269 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.798972 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.509838 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.751529 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.041196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.01778 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.656431 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.039657 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.189321 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.226031 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.871558 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.67646 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.427112 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.111636 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.184614 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.062861 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.564054 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.572311 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.425933 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.870231 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.594929 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.10006 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.852758 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.089461 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.350565 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.448177 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.60015 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.958489 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.744305 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.304513 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31276 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4482 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59145, Sbi_jg63488 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23413 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012787 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02539, Sgl07694 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013250, gene:ENSEOMG00000030639 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019020, CQ.Regalona.r1.3BG0019600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30278300 |
| Apiaceae | Apium graveolens | 2 | Ag10G02981, Ag3G02840 |
| Arecaceae | Cocos nucifera | 1 | scaffold052065G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716987 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G29713 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G58520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006002m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g04350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g073100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1202 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1360 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g06270 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1848 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006834 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1789, BH09.1970, CH09.2122 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0308540, gene-QOZ80_4BG0339520 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0185640.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco07G012160, Oco08G011880 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g46170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G178100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G007360, Chr25G006120, Chr26G012400, Chr30G005930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G674400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG056760, gene_TRIDC2BG059640 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G392800.1.cds1, TraesCS2B02G410900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb427900_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37244 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20171 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1049, evm.TU.LG21.701 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1108 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4080 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14707 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22201 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.577 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004966 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12483 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5646 |
| Salicaceae | Populus euphratica | 1 | populus_peu12348 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645516 |
| Solanaceae | Solanum chilense | 1 | SOLCI001227600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026594 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13496_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1351 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05090.v3.1 |