Basic Information
Locus ID:
Ag3G02797
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Nucleolar protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 295790989 | 295800764 | + | Ag3G02797 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 78,259.07 Da | 47.51 | 74.53 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08159 | NUC153 domain | 487 | 513 | 1.5E-7 | IPR012580 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 32 | 321 | 3.87E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 328 | 4.2E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 194 | 3.1 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 649 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56990.1 | embryo sac development arrest 7. | 0 |
| RefSeq | XP_017247709.1 | PREDICTED: nucleolar protein 10 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q7T0Q5 | Nucleolar protein 10 OS=Xenopus laevis OX=8355 GN=nol10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162ACY6 | NUC153 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013638 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.792702 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.584707 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.227799 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.955154 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.950391 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.688332 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.711915 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.373443 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.769783 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.529753 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.145703 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.140495 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.184332 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 12.723083 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.078071 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.889216 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.696134 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.424487 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.74662 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.085453 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.113834 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.302922 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.248783 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.314352 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.135942 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.642961 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.305525 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.241615 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.920151 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.121157 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.004429 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.83704 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.925784 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.001923 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.182174 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.172242 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.568126 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.17271 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.299823 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.200572 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.105487 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.728837 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.460797 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.24968 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.069687 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.562428 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.64209 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.444383 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.113591 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.281891 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15844 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4590 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027277 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58853, Sbi_jg63755 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23134 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009235 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl02252, Sgl07403, Sgl82719 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000001886, gene:ENSEOMG00000002747 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6BG0025040, CQ.Regalona.r1.9AG0011260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30166350, pistato.v30275280 |
| Apiaceae | Apium graveolens | 1 | Ag3G02797 |
| Arecaceae | Cocos nucifera | 1 | scaffold019715G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715066 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.395.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G16881, Ftri8G23504 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G56990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005807m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05590.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g003530.2N, BniB06g056110.2N, BniB08g071720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1036 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g10090 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0533s00004.v1.0, Dusal.0533s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01800 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8746 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2609 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000007 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16083 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.481, BH06.164, CH06.152 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0643180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027555 |
| Poaceae | Oryza coarctata | 2 | Oco10G003550, Oco12G001200 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g03780.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_10G021000, gene-BS78_K328500, gene-BS78_K328600 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303692, Pt_Chr0401917, Pt_Chr0503301, Pt_Chr0506188 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G008340, Chr08G007450, Chr21G000080, Chr24G003830 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G093300, Tel7E01G129100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG063620, gene_TRIDC4BG019790 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G429300.1, TraesCS7A02G060100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb034510_P001, Zm00001eb373800_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51172 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31269 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1307, evm.TU.LG21.1018 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15930 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1634 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17552 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13562 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.88 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011607 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13221 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12327 |
| Salicaceae | Populus euphratica | 2 | populus_peu10821, populus_peu26261 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606965, gene-LOC132608238 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031938 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21177_chr08_-, gene_10441 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1954 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19690.v3.1 |