Basic Information
Locus ID:
Ag3G02792
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Regulatory protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 295755385 | 295758482 | + | Ag3G02792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 49,919.47 Da | 48.96 | 96.26 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 257 | 339 | 3.5E-12 | IPR020683 |
| Pfam | PF11900 | Domain of unknown function (DUF3420) | 198 | 251 | 7.2E-11 | IPR024228 |
| Pfam | PF00651 | BTB/POZ domain | 15 | 110 | 5.5E-15 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 6 | 192 | 5.1E-19 | IPR011333 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 268 | 352 | 3.42E-19 | IPR036770 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 5 | 196 | 2.3E-26 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 242 | 357 | 2.1E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 274 | 304 | 0.0027 | IPR002110 |
| SMART | SM00225 | BTB_4 | 24 | 163 | 6.9E-20 | IPR000210 |
| SMART | SM00248 | ANK_2a | 309 | 338 | 1.6E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 309 | 339 | 11.001797 | - |
| ProSiteProfiles | PS50097 | BTB domain profile. | 24 | 110 | 17.293198 | IPR000210 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 309 | 341 | 12.20864 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 416 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57130.1 | Ankyrin repeat family protein / BTB/POZ domain-containing protein. Encodes BOP1. Contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves. Along with BOP2, BOP1 is required for nectary development and formation of normal abscission zones.Forms homodimers and heterodimers with BOP2. Nuclear localization is required for activity which includes positive regulation of AS2 in leaves. BOP1/2 promotes floral meristem fate and determinacy in a pathway targetting APETALA1 and AGAMOUS-LIKE24. PUCHI, BOP1 and BOP2 are redundantly required for expression of LFY and AP1. | 0 |
| RefSeq | XP_017243907.1 | PREDICTED: regulatory protein NPR5-like [Daucus carota subsp. sativus] | 0 |
| G3LSH3 | BTB/POZ domain and ankyrin repeat-containing protein NBCL OS=Lotus japonicus OX=34305 GN=NBCL PE=1 SV=1 | 0 | |
| TrEMBL | A0A165YDY1 | BTB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013633 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.733778 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.956566 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.475481 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.132883 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.48358 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.153346 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.095798 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.142555 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.232186 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.041963 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.070581 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.039371 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.040621 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.506567 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.632323 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.232459 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.171716 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.802292 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.303361 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.061387 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.095376 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.482971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.822145 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.604174 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.258045 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.03431 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.073926 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.136072 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.065913 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.072262 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.05343 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.219806 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.819814 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.284671 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.481902 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.248314 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.045196 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.403418 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.075255 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15851, jg31345, jg33241, jg4277 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4606 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022083 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14656, Sbi_jg55411 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25976 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013025, GOSA_00018639 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00041, Sgl69066 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013971, gene:ENSEOMG00000029252 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0022400, CQ.Regalona.r1.3BG0023090 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30188850 |
| Apiaceae | Apium graveolens | 3 | Ag10G02303, Ag2G01526, Ag3G02792 |
| Arecaceae | Cocos nucifera | 6 | COCNU_04G007000, COCNU_12G004620, COCNU_12G004640 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103705107, gene-LOC103713409, gene-LOC103714656 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_07.1598.V1.1, AsparagusV1_08.3009.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G12519, Ftri12G23143 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G41370.1, AT3G57130.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10005948m.g.v1.0, Thhalv10016568m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g23660.v2.2, Sp5g05440.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g004140.2N, BniB06g000610.2N, BniB06g056050.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0967 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1091, Cgl04G1092 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g11530, gene.Cymno05g12520 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g30160 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8425 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2531 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006809 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16102 |
| Poaceae | Echinochloa crus-galli | 10 | AH02.4498, AH03.620, AH04.238, AH05.156, BH02.4549, BH04.234 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0046390, gene-QOZ80_1BG0096380 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0319900.1, HORVU.MOREX.r3.5HG0460940.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003356, gene-QYE76_016529, gene-QYE76_058017 |
| Poaceae | Oryza coarctata | 6 | Oco01G029880, Oco02G031050, Oco21G000750, Oco22G001600 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g72020.1, LOC_Os11g04600.1, LOC_Os12g04410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G400800, gene-BS78_05G039000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0207378, Pt_Chr0605935, Pt_Chr0702999, Pt_Chr0703078 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr02G001120, Chr03G023550, Chr04G021810, Chr05G033550 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G792000, Tel3E01G784900, Tel5E01G238300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG068800, gene_TRIDC3BG078000 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G489000.1, TraesCS3B02G537400.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb093200_P001, Zm00001eb141160_P001 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-10842, nbis-gene-25695, nbis-gene-28172 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g11931, Zma_g17544, Zma_g24706, Zma_g25483, Zma_g9373 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.416, evm.TU.LG13.1279, evm.TU.LG15.525 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1651 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8981 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13577 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011871 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13237 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12344 |
| Salicaceae | Populus euphratica | 2 | populus_peu10875, populus_peu26235 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132607431, gene-LOC132607461, gene-LOC132615877 |
| Solanaceae | Solanum chilense | 2 | SOLCI002780200, SOLCI003729400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107016182, gene-LOC107032228, gene-LOC107032447 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14238_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1901 |
| Zosteraceae | Zostera marina | 2 | Zosma01g39310.v3.1, Zosma02g17520.v3.1 |