halophFGD

Basic Information

Locus ID: Ag3G02760

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: SPX domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	295092664	295095261	+	Ag3G02760

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.16	32,465.96 Da	54.28	91.28	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14481	SPX_AtSPX1_like	2	149	4.73241E-86	-
Pfam	PF03105	SPX domain	1	34	2.5E-9	IPR004331
Pfam	PF03105	SPX domain	114	162	2.9E-10	IPR004331
ProSiteProfiles	PS51382	SPX domain profile.	1	160	28.633112	IPR004331

Best hit

Source	Best Hit ID	Description
TAIR	AT5G20150.1	SPX domain gene 1.
RefSeq	XP_017244128.1	PREDICTED: SPX domain-containing protein 1-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8LBH4	SPX domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SPX1 PE=1 SV=2
TrEMBL	A0A165WXE6	SPX domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014884 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	32.667469	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	32.320255	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	23.63155	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	13.799709	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.030912	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	22.640299	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	33.454708	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	40.216438	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	21.780495	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.479017	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	21.528959	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	32.054016	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	47.250092	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	48.717991	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.380039	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.8409	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.065291	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.596397	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.909561	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.145976	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.397794	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	4.417303	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.472301	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.272202	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	4.511864	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.895559	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.657495	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.483397	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.025794	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	272.865051		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	485.907288		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	414.053802		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	88.639923		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	45.25201		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	69.48436		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	79.426308		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	197.964615		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	120.002899		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	21.734589	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	16.438372	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	59.51334	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.002055	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.661942	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.088522	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.448584	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.277687	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	6.783448	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	30.05658	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	30.895117	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	34.630413	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg1807, jg19778, jg26804, jg26810, jg31624, jg40243, jg4615
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10628, gene_17870, gene_24638
Amaranthaceae	Atriplex hortensis	4	Ah014346, Ah023211, Ah032813, Ah034692
Amaranthaceae	Beta vulgaris	4	BVRB_2g030200, BVRB_2g040290, BVRB_2g040330, BVRB_8g194430
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg21595, Sbi_jg21596, Sbi_jg22225, Sbi_jg29246 ... Sbi_jg29726, Sbi_jg3485, Sbi_jg40704, Sbi_jg43246, Sbi_jg50711
Amaranthaceae	Salicornia europaea	4	Seu_jg16149, Seu_jg18652, Seu_jg2265, Seu_jg6478
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00000237, GOSA_00004399, GOSA_00007962, GOSA_00008753
Amaranthaceae	Suaeda glauca	9	Sgl11336, Sgl16725, Sgl42039, Sgl46815, Sgl62697, Sgl66461 ... Sgl67258, Sgl67318, Sgl70785
Amaranthaceae	Chenopodium album	11	gene:ENSEOMG00000012025, gene:ENSEOMG00000013004 ... gene:ENSEOMG00000014340, gene:ENSEOMG00000017603, gene:ENSEOMG00000018317, gene:ENSEOMG00000018792, gene:ENSEOMG00000033603, gene:ENSEOMG00000033674, gene:ENSEOMG00000048000, gene:ENSEOMG00000048014, gene:ENSEOMG00000049114
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0006580, CQ.Regalona.r1.1BG0021300 ... CQ.Regalona.r1.2AG0006570, CQ.Regalona.r1.2AG0022880, CQ.Regalona.r1.2BG0006790, CQ.Regalona.r1.2BG0022880, CQ.Regalona.r1.8AG0021950, CQ.Regalona.r1.8BG0020520
Anacardiaceae	Pistacia vera	4	pistato.v30002460, pistato.v30128120, pistato.v30249980 ... pistato.v30255160
Apiaceae	Apium graveolens	4	Ag1G00087, Ag2G02837, Ag3G02760, Ag4G00916
Arecaceae	Cocos nucifera	5	COCNU_03G016860, COCNU_13G001870, contig69552339G000010 ... scaffold005863G000020, scaffold012478G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103708749, gene-LOC103713471, gene-LOC103716313 ... gene-LOC103717836
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.2475.V1.1, AsparagusV1_02.2293.V1.1 ... AsparagusV1_03.1321.V1.1, AsparagusV1_04.3061.V1.1, AsparagusV1_06.1018.V1.1, AsparagusV1_06.1747.V1.1, AsparagusV1_08.2452.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G30672, Ftri13G30499, Ftri14G01702, Ftri18G06814 ... Ftri7G02724, Ftri7G15454, Ftri8G23876
Brassicaceae	Arabidopsis thaliana	4	AT2G26660.1, AT2G45130.1, AT5G15330.1, AT5G20150.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10014185m.g.v1.0, Thhalv10014356m.g.v1.0 ... Thhalv10016985m.g.v1.0, Thhalv10023655m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g09230.v2.2, Sp4g27190.v2.2, Sp6g24260.v2.2 ... Sp6g28730.v2.2
Brassicaceae	Brassica nigra	6	BniB01g001650.2N, BniB02g047500.2N, BniB05g043300.2N ... BniB08g010290.2N, BniB08g029390.2N, BniB08g032540.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G2335, Ceq05G1139, Ceq06G0628, Ceq08G0308
Casuarinaceae	Casuarina glauca	4	Cgl04G2540, Cgl05G1149, Cgl06G0647, Cgl08G0257
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g10110, gene.Cymno02g04110, gene.Cymno09g08860 ... gene.Cymno11g01780
Dunaliellaceae	Dunaliella salina	2	Dusal.0039s00001.v1.0, Dusal.1114s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g27280, gene.Thate03g00580, gene.Thate03g20620 ... gene.Thate03g26490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-90
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG02.221, evm.TU.LG02.222, evm.TU.LG07.1442 ... evm.TU.LG07.958, evm.TU.LG07.959
Plantaginaceae	Plantago ovata	5	Pov_00005495, Pov_00013316, Pov_00014950, Pov_00028003 ... Pov_00032606
Plumbaginaceae	Limonium bicolor	6	Lb1G03875, Lb2G10812, Lb2G12673, Lb2G12679, Lb2G13081 ... Lb2G13084
Poaceae	Echinochloa crus-galli	19	AH01.2302, AH01.3348, AH01.450, AH02.1965, AH06.2227 ... AH07.756, BH01.2590, BH01.2618, BH01.291, BH01.3716, BH02.2018, BH06.2007, BH07.885, CH01.131, CH01.2615, CH01.3928, CH02.2182, CH06.2251, CH07.643
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0020220, gene-QOZ80_1BG0070120 ... gene-QOZ80_2AG0105430, gene-QOZ80_2AG0123510, gene-QOZ80_2BG0158890, gene-QOZ80_2BG0178380, gene-QOZ80_3AG0209850, gene-QOZ80_3AG0251740, gene-QOZ80_3BG0255040, gene-QOZ80_3BG0276340, gene-QOZ80_6AG0544400, gene-QOZ80_6BG0497920
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0125510.1, HORVU.MOREX.r3.5HG0528310.1 ... HORVU.MOREX.r3.4HG0396980.1.CDS1, HORVU.MOREX.r3.7HG0719650.1, HORVU.MOREX.r3.7HG0750980.1
Poaceae	Lolium multiflorum	8	gene-QYE76_011168, gene-QYE76_016747, gene-QYE76_021397 ... gene-QYE76_034961, gene-QYE76_039718, gene-QYE76_039733, gene-QYE76_060550, gene-QYE76_067384
Poaceae	Oryza coarctata	11	Oco03G004580, Oco04G005310, Oco05G015610, Oco05G027860 ... Oco06G016130, Oco06G028840, Oco11G012350, Oco12G012530, Oco14G013310, Oco19G003440, Oco20G003480
Poaceae	Oryza sativa	5	LOC_Os02g10780.1, LOC_Os03g29250.1, LOC_Os03g61200.1 ... LOC_Os06g40120.1, LOC_Os10g25310.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G024900, gene-BS78_01G327300, gene-BS78_K056600 ... gene-BS78_03G167500, gene-BS78_04G078200, gene-BS78_10G184700, gene-BS78_K246600
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0105894, Pt_Chr0202080, Pt_Chr0202090, Pt_Chr0306264 ... Pt_Chr0306277, Pt_Chr0400644, Pt_Chr0400666
Poaceae	Sporobolus alterniflorus	17	Chr01G024430, Chr02G018170, Chr02G029830, Chr03G008110 ... Chr04G013100, Chr04G019150, Chr04G031820, Chr05G007500, Chr06G014670, Chr07G012560, Chr07G030850, Chr08G008900, Chr0G008070, Chr0G021840, Chr10G017600, Chr12G032770, Chr20G005320
Poaceae	Thinopyrum elongatum	6	Tel2E01G332800, Tel5E01G779900, Tel7E01G637900 ... Tel7E01G973300, Tel7E01G973600, Tel7E01G977000
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG021510, gene_TRIDC2BG025490 ... gene_TRIDC4AG054760, gene_TRIDC4AG065630, gene_TRIDC5BG075370, gene_TRIDC7AG052540, gene_TRIDC7BG044970
Poaceae	Triticum aestivum	16	TraesCS2A02G169600.1, TraesCS2B02G195900.1 ... TraesCS2D02G177100.1, TraesCS4A02G367200.1, TraesCS5B02G505400.1, TraesCS5D02G506200.1, TraesCS7A02G376200.1, TraesCS7A02G554000.1, TraesCS7A02G554100.1, TraesCS7A02G554800.1, TraesCS7B02G277700.1, TraesCS7B02G478000.1, TraesCS7D02G372600.1, TraesCS7D02G541100.1, TraesCS7D02G541600.1, TraesCSU02G094800.1
Poaceae	Zea mays	4	Zm00001eb048730_P001, Zm00001eb063280_P003 ... Zm00001eb162710_P001, Zm00001eb386270_P001
Poaceae	Zoysia japonica	9	nbis-gene-12115, nbis-gene-15553, nbis-gene-15554 ... nbis-gene-21396, nbis-gene-33446, nbis-gene-41066, nbis-gene-44051, nbis-gene-46689, nbis-gene-53100
Poaceae	Zoysia macrostachya	8	Zma_g1030, Zma_g10496, Zma_g129, Zma_g15153, Zma_g15987 ... Zma_g2452, Zma_g33034, Zma_g8019
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1979, evm.TU.LG19.749, evm.TU.LG23.237 ... evm.TU.LG24.740
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g08440, gene.Posoc03g19780, gene.Posoc03g21020 ... gene.Posoc04g02980, gene.Posoc09g12650
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.41, evm.TU.Scaffold_3_RagTag.1753 ... evm.TU.Scaffold_4_RagTag.2314, evm.TU.Scaffold_7_RagTag.202
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12858, nbisL1-mrna-19519, nbisL1-mrna-28085
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10505, nbisL1-mrna-10552, nbisL1-mrna-18369 ... nbisL1-mrna-21322
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16480, nbisL1-mrna-2946, nbisL1-mrna-5057 ... nbisL1-mrna-7086
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000008l.1361, evm.TU.utg000019l.164 ... evm.TU.utg000028l.117, evm.TU.utg000033l.24
Rhizophoraceae	Kandelia obovata	4	Maker00001001, Maker00002243, Maker00010465, Maker00014921
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12143, nbisL1-mrna-16748, nbisL1-mrna-1820 ... nbisL1-mrna-8077
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14445, nbisL1-mrna-18263, nbisL1-mrna-22345 ... nbisL1-mrna-9757
Salicaceae	Populus euphratica	6	populus_peu00666, populus_peu04767, populus_peu05773 ... populus_peu11140, populus_peu12890, populus_peu31818
Solanaceae	Lycium barbarum	6	gene-LOC132600039, gene-LOC132606075, gene-LOC132621605 ... gene-LOC132635903, gene-LOC132636216, gene-LOC132636957
Solanaceae	Solanum chilense	3	SOLCI002968300, SOLCI003751600, SOLCI003851900
Solanaceae	Solanum pennellii	5	gene-LOC107005465, gene-LOC107008693, gene-LOC107009225 ... gene-LOC107027032, gene-LOC107030280
Tamaricaceae	Reaumuria soongarica	4	STRG.12113_chr02_-, STRG.602_chr01_-, gene_1521, gene_17260
Tamaricaceae	Tamarix chinensis	4	TC01G1269, TC01G1525, TC03G2625, TC10G1332
Zosteraceae	Zostera marina	3	Zosma01g07730.v3.1, Zosma01g17060.v3.1, Zosma05g32320.v3.1