halophFGD

Basic Information

Locus ID: Ag3G02757

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: BRCA1-associated protein 2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	294934750	294942006	-	Ag3G02757

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.50	55,047.38 Da	56.33	77.09	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16457	RING-H2_BRAP2	167	209	3.52232E-18	-
Pfam	PF02148	Zn-finger in ubiquitin-hydrolases and other protein	205	279	1.0E-13	IPR001607
Pfam	PF07576	BRCA1-associated protein 2	59	156	1.7E-28	IPR011422
SUPERFAMILY	SSF57850	RING/U-box	185	288	1.18E-17	-
SUPERFAMILY	SSF57850	RING/U-box	168	214	5.55E-7	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	188	301	1.8E-19	IPR013083
SMART	SM00290	Zf_UBP_1	219	268	2.3E-13	IPR001607
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	169	209	10.822189	IPR001841
ProSiteProfiles	PS50271	Zinc finger UBP-type profile.	218	279	16.269039	IPR001607
MobiDBLite	mobidb-lite	consensus disorder prediction	460	474	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	460	484	-	-
Coils	Coil	Coil	337	357	-	-
Coils	Coil	Coil	394	424	-	-
Coils	Coil	Coil	366	386	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K10632 (BRCA1-associated protein [EC:2.3.2.27])

Pathway:

ko04014 (Ras signaling pathway) map04014 (Ras signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G42160.1	zinc finger (ubiquitin-hydrolase) domain-containing protein.
RefSeq	XP_017247955.1	PREDICTED: BRCA1-associated protein isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	E5KGE0	BRAP2 RING ZnF UBP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRIZ1 PE=1 SV=1
TrEMBL	A0A165WWY2	BRCA1-associated protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014897 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	20.444483	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.974802	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.849719	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.632091	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.221966	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	14.920213	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.193153	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.783734	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	12.518874	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.689491	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	17.027069	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	15.609172	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	16.03673	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	13.812664	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.066923	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.174563	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.617653	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.419666	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.84969	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.464278	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	10.238285	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.29426	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.09389	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.765898	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.794507	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	8.750838	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	6.388523	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.495544	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.328424	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.169967		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.001948		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.937589		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.981622		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	6.301412		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.815521		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.287622		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	2.948377		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.946954		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.216311	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.632423	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.437087	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	19.036545	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	17.245089	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	15.944809	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	15.389727	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	17.604479	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	13.918112	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.402004	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.859401	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.306453	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg13483, jg30151
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26234, gene_8965
Amaranthaceae	Atriplex hortensis	2	Ah010413, Ah028443
Amaranthaceae	Beta vulgaris	1	BVRB_8g193950
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg11643, Sbi_jg25645, Sbi_jg46752, Sbi_jg6727 ... Sbi_jg9466
Amaranthaceae	Salicornia europaea	2	Seu_jg19150, Seu_jg20897
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001863, GOSA_00010991
Amaranthaceae	Suaeda glauca	5	Sgl41994, Sgl46769, Sgl56022, Sgl60568, Sgl61215
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000007636, gene:ENSEOMG00000038006 ... gene:ENSEOMG00000039187, gene:ENSEOMG00000039851, gene:ENSEOMG00000052220
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0009090, CQ.Regalona.r1.9BG0009040
Anacardiaceae	Pistacia vera	3	pistato.v30129530, pistato.v30129570, pistato.v30254900
Apiaceae	Apium graveolens	2	Ag3G02757, Ag9G01191
Arecaceae	Cocos nucifera	2	COCNU_11G000060, COCNU_11G008190
Arecaceae	Phoenix dactylifera	2	gene-LOC103706462, gene-LOC103710083
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3315.V1.1, AsparagusV1_08.1576.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G32698, Ftri16G26820
Brassicaceae	Arabidopsis thaliana	2	AT2G26000.2, AT2G42160.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004093m.g.v1.0, Thhalv10018494m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g26300.v2.2, Sp5g35210.v2.2
Brassicaceae	Brassica nigra	2	BniB05g075610.2N, BniB06g011650.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0597
Casuarinaceae	Casuarina glauca	1	Cgl06G0617
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g05440, gene.Cymno03g03720
Dunaliellaceae	Dunaliella salina	1	Dusal.0313s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g07880, gene.Thate07g13950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.787, evm.TU.LG07.934
Plantaginaceae	Plantago ovata	2	Pov_00034532, Pov_00039768
Plumbaginaceae	Limonium bicolor	2	Lb6G31727, Lb7G32914
Poaceae	Echinochloa crus-galli	7	AH07.610, AH09.2502, BH05.1545, BH07.735, BH09.2725 ... CH01.1621, CH09.2922
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0104010, gene-QOZ80_2BG0157310 ... gene-QOZ80_4AG0301680, gene-QOZ80_4BG0332400
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0204960.1, HORVU.MOREX.r3.6HG0568250.1
Poaceae	Lolium multiflorum	2	gene-QYE76_021077, gene-QYE76_046735
Poaceae	Oryza coarctata	4	Oco03G004240, Oco04G004200, Oco04G004210, Oco07G017490
Poaceae	Oryza sativa	2	LOC_Os02g09060.1, LOC_Os04g55480.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G062500, gene-BS78_06G250900 ... gene-BS78_06G258500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0202287, Pt_Chr0300720, Pt_Chr0300775, Pt_Chr0302596 ... Pt_Chr0702839
Poaceae	Sporobolus alterniflorus	4	Chr15G025060, Chr22G012520, Chr23G002470, Chr26G016880
Poaceae	Thinopyrum elongatum	2	Tel2E01G873400, Tel6E01G302900
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG072370, gene_TRIDC2BG078350 ... gene_TRIDC2BG078390, gene_TRIDC6AG019920, gene_TRIDC6BG025930
Poaceae	Triticum aestivum	8	TraesCS2A02G515000.1, TraesCS2A02G515200.1 ... TraesCS2B02G543300.1, TraesCS2D02G516500.1, TraesCS2D02G516600.1, TraesCS6A02G145300.2, TraesCS6B02G173500.2, TraesCS6D02G134300.1
Poaceae	Zea mays	2	Zm00001eb068570_P002, Zm00001eb234370_P001
Poaceae	Zoysia japonica	4	nbis-gene-23013, nbis-gene-33573, nbis-gene-47991 ... nbis-gene-6022
Poaceae	Zoysia macrostachya	3	Zma_g12321, Zma_g20553, Zma_g22094
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.971, evm.TU.LG22.101
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g04040, gene.Posoc02g23850
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.57, evm.TU.Scaffold_11_RagTag.191
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12873, nbisL1-mrna-14257
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20049, nbisL1-mrna-21313
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14384, nbisL1-mrna-16497
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000005l.263, evm.TU.utg000033l.38
Rhizophoraceae	Kandelia obovata	2	Maker00010115, Maker00014860
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16735, nbisL1-mrna-328
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14460, nbisL1-mrna-19037
Salicaceae	Populus euphratica	4	populus_peu05743, populus_peu14103, populus_peu23216 ... populus_peu23217
Solanaceae	Lycium barbarum	2	gene-LOC132603151, gene-LOC132633320
Solanaceae	Solanum chilense	2	SOLCI002474300, SOLCI003056200
Solanaceae	Solanum pennellii	2	gene-LOC107012390, gene-LOC107024273
Tamaricaceae	Reaumuria soongarica	2	gene_10968, gene_8982
Tamaricaceae	Tamarix chinensis	2	TC08G1442, TC10G1283
Zosteraceae	Zostera marina	2	Zosma04g18000.v3.1, Zosma06g25840.v3.1