Basic Information
Locus ID:
Ag3G02753
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 294901323 | 294904282 | + | Ag3G02753 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 48,081.21 Da | 41.07 | 76.31 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 99 | 375 | 4.08124E-92 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 97 | 372 | 1.9E-49 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 75 | 375 | 9.02E-81 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 68 | 178 | 7.2E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 179 | 384 | 2.7E-63 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 93 | 390 | 38.011284 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 99 | 131 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 221 | 233 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 428 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01300.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017247414.1 | PREDICTED: receptor-like serine/threonine-protein kinase At3g01300 [Daucus carota subsp. sativus] | 0 |
| Q9SRH7 | Serine/threonine-protein kinase PBL35 OS=Arabidopsis thaliana OX=3702 GN=PBL35 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T3V2 | receptor-like serine/threonine-protein kinase At3g01300 OS=Sesamum indicum OX=4182 GN=LOC105162130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.79082 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.754086 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.366492 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.034177 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.528667 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.488934 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.140625 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.349285 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.405123 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.210604 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.800262 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.820421 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.32597 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.589521 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.786773 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.197301 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.490658 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.889927 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.226303 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.571507 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.879317 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 83.717697 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 87.784599 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 79.394676 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 71.016869 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.577688 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.974422 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.455256 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 25.520792 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.31724 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.361763 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.105922 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.875707 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.249573 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.208376 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.757931 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.383512 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.745287 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.571288 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.528428 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.457968 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.695732 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.110965 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 5.96572 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.185301 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.132056 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.287331 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 49.653183 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 50.580563 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 57.005085 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33049 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10614 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014302 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g193850 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg25637, Sbi_jg31573, Sbi_jg9442 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19165 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011000 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41986, Sgl46760 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010592, gene:ENSEOMG00000034776 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0022360, CQ.Regalona.r1.8BG0020070 |
| Apiaceae | Apium graveolens | 1 | Ag3G02753 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000490 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710113 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G28711, Ftri3G28294 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0589 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0609 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00840 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-76 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.645, evm.TU.LG07.646 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035254 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G32050, Lb6G32068 |
| Poaceae | Echinochloa crus-galli | 2 | AH06.395, CH06.522 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0510400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028386 |
| Poaceae | Oryza coarctata | 2 | Oco11G003270, Oco12G003240 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g07230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G057900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402057 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G021980 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G255100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG015450, gene_TRIDC7BG004840 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G131300.1, TraesCS7B02G031900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb086190_P001, Zm00001eb375480_P003 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31425 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g04470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.63 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12884 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16707 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16501 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.43 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014514 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16730 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14468 |
| Salicaceae | Populus euphratica | 2 | populus_peu05736, populus_peu11109 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603143 |
| Solanaceae | Solanum chilense | 1 | SOLCI005010700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026184 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12168_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1270 |