halophFGD

Basic Information

Locus ID: Ag3G02742

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Monogalactosyldiacylglycerol synthase 2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	294726514	294729915	+	Ag3G02742

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.12	51,730.15 Da	40.76	88.78	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17507	GT28_Beta-DGS-like	60	436	3.95433E-135	-
Pfam	PF06925	Monogalactosyldiacylglycerol (MGDG) synthase	71	239	3.7E-61	IPR009695
Pfam	PF04101	Glycosyltransferase family 28 C-terminal domain	288	399	6.3E-10	IPR007235
SUPERFAMILY	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase	60	435	3.31E-25	-
Gene3D	G3DSA:3.40.50.2000	Glycogen Phosphorylase B;	247	420	1.3E-28	-

Gene Ontology

Biological Process:

GO:0009247 (glycolipid biosynthetic process)

Molecular Function:

GO:0016758 (hexosyltransferase activity)

KEGG Pathway

KO Term:

K03715 (1,2-diacylglycerol 3-beta-galactosyltransferase [EC:2.4.1.46])

Pathway:

ko00561 (Glycerolipid metabolism) map00561 (Glycerolipid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R02691 (UDP-alpha-D-galactose + 1,2-Diacyl-sn-glycerol <=> UDP + 1,2-Diacyl-3-beta-D-galactosyl-sn-glycerol)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G20410.1	monogalactosyldiacylglycerol synthase 2. Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation.
RefSeq	XP_017243657.1	PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	O82730	Monogalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MGD2 PE=1 SV=1
TrEMBL	A0A162A8R7	monogalactosyldiacylglycerol synthase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014906 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.041716	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.293454	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.505717	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.575132	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.930815	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.607487	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.035213	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.968775	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	11.357686	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	12.7405	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	12.828321	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.500627	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.13318	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	7.976058	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.012131	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	13.197357	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.076292	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	25.66976	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	41.529633	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	35.098114	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	20.90807	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.829078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.218344	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.563749	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.729977	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	26.268805	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	19.405411	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	17.513721	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	28.741861	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	18.045479		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	47.472733		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	36.752808		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	3.399214		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	76.930618		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.523959		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.002931		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	5.068041		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	4.332863		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	6.645184	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	26.109667	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	17.916302	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	7.309793	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	28.54554	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	36.230667	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	36.797886	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	7.421953	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	27.587727	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.258605	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	101.837868	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	103.074646	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg23749, jg31605, jg33030
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10596, gene_25105
Amaranthaceae	Atriplex hortensis	2	Ah014261, Ah031794
Amaranthaceae	Beta vulgaris	2	BVRB_2g044370, BVRB_8g193150
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg19302, Sbi_jg25553, Sbi_jg43868, Sbi_jg9374
Amaranthaceae	Salicornia europaea	2	Seu_jg18052, Seu_jg19233
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00014590
Amaranthaceae	Suaeda glauca	3	Sgl41922, Sgl65597, Sgl69901
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011067, gene:ENSEOMG00000013761 ... gene:ENSEOMG00000020844, gene:ENSEOMG00000033081, gene:ENSEOMG00000047430, gene:ENSEOMG00000048866
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0001110, CQ.Regalona.r1.2BG0002160 ... CQ.Regalona.r1.8AG0022710, CQ.Regalona.r1.8BG0019700
Anacardiaceae	Pistacia vera	2	pistato.v30251220, pistato.v30261690
Apiaceae	Apium graveolens	3	Ag3G02742, Ag7G00282, Ag9G02663
Arecaceae	Cocos nucifera	6	COCNU_01G004120, COCNU_01G018090, COCNU_11G000580 ... COCNU_11G008010, COCNU_11G012300, contig69276588G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103706476, gene-LOC103707463, gene-LOC103710116 ... gene-LOC103715894
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.3433.V1.1, AsparagusV1_05.3299.V1.1 ... AsparagusV1_08.1573.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G06549, Ftri14G06847, Ftri7G06831, Ftri7G20006
Brassicaceae	Arabidopsis thaliana	3	AT2G11810.1, AT4G31780.2, AT5G20410.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10013431m.g.v1.0, Thhalv10022676m.g.v1.0 ... Thhalv10024883m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g26310.v2.2, Sp4g03920.v2.2, Sp6g24010.v2.2 ... Sp7g29570.v2.2
Brassicaceae	Brassica nigra	4	BniB02g085520.2N, BniB05g006220.2N, BniB05g043040.2N ... BniB06g037030.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2481, Ceq06G1409
Casuarinaceae	Casuarina glauca	2	Cgl04G2707, Cgl06G1471
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g07360, gene.Cymno13g01840
Dunaliellaceae	Dunaliella salina	1	Dusal.0007s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g18330, gene.Thate02g06750, gene.Thate05g06060 ... gene.Thate06g21600
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-68
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1552, evm.TU.LG07.604
Plantaginaceae	Plantago ovata	2	Pov_00001111, Pov_00028760
Plumbaginaceae	Limonium bicolor	2	Lb1G00027, Lb1G03804
Poaceae	Echinochloa crus-galli	9	AH03.1969, AH07.3815, AH08.1171, BH03.2434, BH07.3638 ... BH08.1140, CH03.2300, CH07.3710, CH08.1259
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0149370, gene-QOZ80_2BG0204800 ... gene-QOZ80_5AG0373780, gene-QOZ80_5BG0422480, gene-QOZ80_6AG0535610, gene-QOZ80_6BG0489070
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0346410.1, HORVU.MOREX.r3.5HG0482570.1 ... HORVU.MOREX.r3.6HG0626070.1
Poaceae	Lolium multiflorum	5	gene-QYE76_005303, gene-QYE76_026495, gene-QYE76_038148 ... gene-QYE76_038163, gene-QYE76_038166
Poaceae	Oryza coarctata	4	Oco03G024520, Oco04G024980, Oco17G005240, Oco18G005260
Poaceae	Oryza sativa	3	LOC_Os02g55910.1, LOC_Os08g20420.1, LOC_Os09g25580.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G187000, gene-BS78_04G309200 ... gene-BS78_07G115200
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0202038, Pt_Chr0206175, Pt_Chr0206210, Pt_Chr0705311
Poaceae	Sporobolus alterniflorus	9	Chr06G000300, Chr09G017390, Chr0G009210, Chr0G013010 ... Chr0G032850, Chr13G001590, Chr14G014230, Chr15G001510, Chr21G013300
Poaceae	Thinopyrum elongatum	3	Tel4E01G163200, Tel5E01G363200, Tel6E01G657400
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG033930, gene_TRIDC4BG015940 ... gene_TRIDC5AG035560, gene_TRIDC5BG037430, gene_TRIDC6AG055030, gene_TRIDC6BG064430
Poaceae	Triticum aestivum	9	TraesCS4A02G212800.1, TraesCS4B02G103000.2 ... TraesCS4D02G099600.1, TraesCS5A02G221800.1, TraesCS5B02G220600.1, TraesCS5D02G229600.1, TraesCS6A02G368700.1, TraesCS6B02G404700.1, TraesCS6D02G352200.1
Poaceae	Zea mays	3	Zm00001eb034810_P001, Zm00001eb258130_P001 ... Zm00001eb313310_P002
Poaceae	Zoysia japonica	4	nbis-gene-20075, nbis-gene-30784, nbis-gene-39886 ... nbis-gene-49414
Poaceae	Zoysia macrostachya	4	Zma_g17352, Zma_g23858, Zma_g30342, Zma_g32390
Portulacaceae	Portulaca oleracea	4	evm.TU.LG16.1603, evm.TU.LG18.344, evm.TU.LG26.65 ... evm.TU.LG26.695
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g13470, gene.Posoc10g04150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.86, evm.TU.Scaffold_10_RagTag.922 ... evm.TU.Scaffold_4_RagTag.2275
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-12905, nbisL1-mrna-13556, nbisL1-mrna-25197
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10807, nbisL1-mrna-3160, nbisL1-mrna-6622
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16522, nbisL1-mrna-5013, nbisL1-mrna-9170
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.221, evm.TU.utg000008l.1328 ... evm.TU.utg000033l.57
Rhizophoraceae	Kandelia obovata	3	Maker00001556, Maker00004235, Maker00014595
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16718, nbisL1-mrna-1855, nbisL1-mrna-3718
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14485, nbisL1-mrna-22296
Salicaceae	Populus euphratica	4	populus_peu04664, populus_peu05699, populus_peu11082 ... populus_peu13023
Solanaceae	Lycium barbarum	3	gene-LOC132603111, gene-LOC132609443, gene-LOC132636984
Solanaceae	Solanum chilense	3	SOLCI001249000, SOLCI003627200, SOLCI007528900
Solanaceae	Solanum pennellii	3	gene-LOC107007576, gene-LOC107026350, gene-LOC107028612
Tamaricaceae	Reaumuria soongarica	2	STRG.12240_chr02_-, STRG.1317_chr01_+
Tamaricaceae	Tamarix chinensis	2	TC01G1019, TC10G1184
Zosteraceae	Zostera marina	2	Zosma03g19330.v3.1, Zosma05g19150.v3.1