Basic Information
Locus ID:
Ag3G02628
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 291286678 | 291289298 | + | Ag3G02628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 46,178.44 Da | 41.23 | 68.25 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 390 | - | - |
| Coils | Coil | Coil | 15 | 35 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27090.1 | glycine-rich protein. | 0 |
| RefSeq | XP_017235950.1 | PREDICTED: uncharacterized protein LOC108209518 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161XH11 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_007126 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 76.728966 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 57.527634 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 57.459728 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 59.697498 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 57.812416 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 105.322372 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 66.558899 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 69.805443 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 81.533974 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 79.713989 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 82.745842 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 79.876572 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 67.311295 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 61.883396 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.761684 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 27.486881 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 32.5065 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 38.453228 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 30.744066 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.837852 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 42.615971 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 53.51572 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 61.850731 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 46.380768 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 48.893372 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 39.348392 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 38.957985 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 47.546185 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 42.665855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 60.146309 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 82.370583 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 75.003448 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 88.161003 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 60.231518 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 94.886131 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 77.424217 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 69.058739 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 74.509956 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 67.821045 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 24.717096 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.920429 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 36.578442 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 76.506645 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 271.986145 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 135.952652 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 49.439144 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 121.503922 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 66.563354 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 64.718849 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 70.977631 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg5444, jg7087, jg9384, jg9385 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3724 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013336 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154790 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12178, Sbi_jg25593, Sbi_jg43110, Sbi_jg45705 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11547 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001928 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35929, Sgl41239 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000087, gene:ENSEOMG00000002820 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0007320, CQ.Regalona.r1.6BG0007910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224440 |
| Apiaceae | Apium graveolens | 2 | Ag3G02628, Ag3G02630 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G013500, COCNU_14G012780 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712049, gene-LOC103720099 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G03629 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G27090.1, AT3G24690.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007745m.g.v1.0, Thhalv10029189m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g21690.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g019030.2N, BniB03g031340.2N, BniB08g037800.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0011 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0001 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05380 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05940 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5815 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.132, evm.TU.LG03.179 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027017 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01168 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.1000, AH03.1394, BH01.1142, CH01.1192, CH03.1642 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0221050, gene-QOZ80_3BG0266210 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.1HG0072810.1, HORVU.MOREX.r3.1HG0076750.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003251 |
| Poaceae | Oryza coarctata | 2 | Oco05G020560, Oco06G021310 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g13550.1, LOC_Os03g48260.1, LOC_Os11g11180.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G121500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104936 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G026050, Chr07G024950, Chr12G029330 |
| Poaceae | Thinopyrum elongatum | 4 | Tel4E01G057000, Tel4E01G057100, Tel4E01G065300 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC3BG042410, gene_TRIDC4AG040450 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS4A02G258800.2, TraesCS4A02G280000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb053410_P001, Zm00001eb217180_P003 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14676, nbis-gene-15781, nbis-gene-38476 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3048, Zma_g740 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.311, evm.TU.LG21.16 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11600 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.683, evm.TU.Scaffold_17_RagTag.318 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23011, nbisL1-mrna-26867, nbisL1-mrna-28183 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-331, nbisL1-mrna-7461 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14843, nbisL1-mrna-15700 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.361, evm.TU.utg000013l.217 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002697, Maker00006401 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11302, nbisL1-mrna-7127 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15790, nbisL1-mrna-17819 |
| Salicaceae | Populus euphratica | 2 | populus_peu07786, populus_peu21851 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615018, gene-LOC132626130 |
| Solanaceae | Solanum chilense | 1 | SOLCI005208800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007956, gene-LOC107020945 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13627 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G3253, TC03G0695, TC06G1161 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09830.v3.1 |