halophFGD

Basic Information

Locus ID: Ag3G02621

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Pyruvate kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	288726774	288735831	+	Ag3G02621

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.35	57,712.98 Da	32.16	96.53	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00224	Pyruvate kinase, barrel domain	30	376	2.4E-94	IPR015793
Pfam	PF02887	Pyruvate kinase, alpha/beta domain	395	522	6.8E-24	IPR015795
SUPERFAMILY	SSF50800	PK beta-barrel domain-like	96	186	2.97E-8	IPR011037
SUPERFAMILY	SSF52935	PK C-terminal domain-like	358	520	1.14E-22	IPR036918
SUPERFAMILY	SSF51621	Phosphoenolpyruvate/pyruvate domain	7	375	1.47E-75	IPR015813
Gene3D	G3DSA:3.40.1380.20	-	371	513	7.0E-150	IPR036918
Gene3D	G3DSA:3.20.20.60	-	30	370	7.0E-150	IPR040442
Gene3D	G3DSA:2.40.33.10	-	96	202	7.0E-150	IPR015806
TIGRFAM	TIGR01064	pyruv_kin: pyruvate kinase	30	516	2.5E-111	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	85	101	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	329	347	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	221	235	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	348	364	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	280	304	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	253	279	3.6E-44	IPR001697

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process)

Molecular Function:

GO:0000287 (magnesium ion binding) GO:0003824 (catalytic activity) GO:0004743 (pyruvate kinase activity) GO:0030955 (potassium ion binding)

KEGG Pathway

KO Term:

K00873 (pyruvate kinase [EC:2.7.1.40])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00620 (Pyruvate metabolism) map00620 (Pyruvate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00049 (Adenine ribonucleotide biosynthesis, IMP => ADP,ATP) M00050 (Guanine ribonucleotide biosynthesis, IMP => GDP,GTP)

Reaction:

R00200 (ATP + Pyruvate <=> ADP + Phosphoenolpyruvate) R00430 (GTP + Pyruvate <=> GDP + Phosphoenolpyruvate) R01138 (dATP + Pyruvate <=> dADP + Phosphoenolpyruvate) R01858 (dGTP + Pyruvate <=> dGDP + Phosphoenolpyruvate) R02320 (Nucleoside triphosphate + Pyruvate <=> NDP + Phosphoenolpyruvate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G52990.1	Pyruvate kinase family protein.
RefSeq	XP_017247750.1	PREDICTED: pyruvate kinase 1, cytosolic [Daucus carota subsp. sativus]
Swiss-Prot	B8BJ39	Pyruvate kinase 1, cytosolic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35105 PE=3 SV=1
TrEMBL	A0A162A8B6	Pyruvate kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015026 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	113.204132	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	69.795395	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	93.373886	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	96.845886	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	102.187553	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	72.199715	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	67.507751	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	50.257973	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	62.636662	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	59.534779	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	61.247746	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	49.880352	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	58.522766	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	54.2616	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	192.694397	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	210.053131	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	189.906448	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	201.608749	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	135.836884	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	242.337357	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	240.64856	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	120.184822	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	122.054863	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	109.219055	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	133.288086	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	135.531967	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	132.020462	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	106.345337	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	127.695778	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	53.112251		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	47.028614		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	41.190678		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	68.846786		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	51.749302		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	98.726685		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	126.28112		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	77.181786		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	108.474068		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	70.080811	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	91.294777	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	69.797333	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	440.548615	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	237.979691	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	162.294724	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	186.32637	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	497.787506	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	165.238907	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	54.083466	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	52.218613	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	57.891834	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14503, jg14504, jg15028, jg31985, jg32659, jg3550
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14392, gene_4596
Amaranthaceae	Atriplex hortensis	3	Ah007026, Ah022120, Ah030809
Amaranthaceae	Beta vulgaris	2	BVRB_3g062650, BVRB_7g160680
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg27491, Sbi_jg33228, Sbi_jg35918, Sbi_jg59711 ... Sbi_jg63766
Amaranthaceae	Salicornia europaea	2	Seu_jg24163, Seu_jg7943
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005650, GOSA_00013019, GOSA_00024114
Amaranthaceae	Suaeda glauca	5	Sgl02246, Sgl21440, Sgl68668, Sgl71366, Sgl74959
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000000151, gene:ENSEOMG00000029320 ... gene:ENSEOMG00000036612, gene:ENSEOMG00000039646, gene:ENSEOMG00000043750, gene:ENSEOMG00000043781
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0022640, CQ.Regalona.r1.3BG0023370 ... CQ.Regalona.r1.4AG0015520, CQ.Regalona.r1.7AG0019400, CQ.Regalona.r1.7BG0022000
Anacardiaceae	Pistacia vera	3	pistato.v30170160, pistato.v30274520, pistato.v30295450
Apiaceae	Apium graveolens	3	Ag11G04553, Ag2G02950, Ag3G02621
Arecaceae	Cocos nucifera	3	COCNU_03G001910, scaffold004526G000010 ... scaffold007042G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103696956, gene-LOC103697737, gene-LOC103704838
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.882.V1.1, AsparagusV1_09.271.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G31230, Ftri12G08362, Ftri18G02215, Ftri6G04778 ... Ftri9G22291
Brassicaceae	Arabidopsis thaliana	2	AT2G36580.1, AT3G52990.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10010288m.g.v1.0, Thhalv10016506m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g18870.v2.2, Sp5g09330.v2.2
Brassicaceae	Brassica nigra	3	BniB06g058090.2N, BniB06g066250.2N, BniB08g067380.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1515, Ceq05G1171
Casuarinaceae	Casuarina glauca	3	Cgl02G1570, Cgl05G1182, Cgl05G1184
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g01240, gene.Cymno07g10330, gene.Cymno08g03420
Dunaliellaceae	Dunaliella salina	3	Dusal.0164s00012.v1.0, Dusal.0444s00010.v1.0 ... Dusal.1013s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate06g11500, gene.Thate06g11840, gene.Thate08g08560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8580
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2155, evm.TU.LG02.1190
Plantaginaceae	Plantago ovata	3	Pov_00004952, Pov_00006274, Pov_00040226
Plumbaginaceae	Limonium bicolor	4	Lb2G09778, Lb3G16095, Lb3G19161, Lb3G19295
Poaceae	Echinochloa crus-galli	8	AH04.273, AH04.990, AH05.182, BH04.260, BH04.939, BH05.210 ... CH04.1084, CH05.267
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_5AG0381270, gene-QOZ80_5BG0428320 ... gene-QOZ80_9AG0674470, gene-QOZ80_9AG0678490, gene-QOZ80_9BG0698280, gene-QOZ80_9BG0702120
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0345500.1, HORVU.MOREX.r3.5HG0459370.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003144, gene-QYE76_064297, gene-QYE76_064309
Poaceae	Oryza coarctata	6	Oco21G001040, Oco21G003200, Oco22G001870, Oco22G004000 ... Oco23G001670, Oco24G001210
Poaceae	Oryza sativa	3	LOC_Os11g05110.1, LOC_Os11g10980.1, LOC_Os12g05110.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G046700, gene-BS78_08G022200 ... gene-BS78_10G045000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103974, Pt_Chr0703114, Pt_Chr0703153, Pt_Chr0704216
Poaceae	Sporobolus alterniflorus	8	Chr04G022040, Chr06G023760, Chr07G021430, Chr17G010520 ... Chr19G012030, Chr27G003930, Chr31G000890, Chr31G003340
Poaceae	Thinopyrum elongatum	2	Tel3E01G781500, Tel5E01G237000
Poaceae	Triticum dicoccoides	5	gene_TRIDC1BG017820, gene_TRIDC4AG032330 ... gene_TRIDC4BG016570, gene_TRIDC5AG022750, gene_TRIDC5BG023180
Poaceae	Triticum aestivum	6	TraesCS4A02G203300.1, TraesCS4B02G107200.4 ... TraesCS4D02G104100.1, TraesCS5A02G131100.1, TraesCS5B02G131000.1, TraesCS5D02G138800.1
Poaceae	Zea mays	3	Zm00001eb168480_P001, Zm00001eb196650_P001 ... Zm00001eb406450_P001
Poaceae	Zoysia japonica	3	nbis-gene-25666, nbis-gene-40164, nbis-gene-46368
Poaceae	Zoysia macrostachya	4	Zma_g17558, Zma_g17777, Zma_g24725, Zma_g25493
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2283, evm.TU.LG07.405, evm.TU.LG08.1498 ... evm.TU.LG15.535, evm.TU.LG16.1163, evm.TU.LG17.1331, evm.TU.LG20.1379, evm.TU.LG22.390
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g15490, gene.Posoc05g23180
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1142, evm.TU.Scaffold_2_RagTag.954 ... evm.TU.Scaffold_1_RagTag.1472
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13437, nbisL1-mrna-4253, nbisL1-mrna-6124
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1040, nbisL1-mrna-4535
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-21782, nbisL1-mrna-3984, nbisL1-mrna-3987
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.323, evm.TU.utg000009l.927 ... evm.TU.utg000016l.488
Rhizophoraceae	Kandelia obovata	3	Maker00003873, Maker00006164, Maker00016410
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12584, nbisL1-mrna-16312, nbisL1-mrna-7662
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21418, nbisL1-mrna-415, nbisL1-mrna-5785
Salicaceae	Populus euphratica	3	populus_peu06154, populus_peu11596, populus_peu20012
Solanaceae	Lycium barbarum	2	gene-LOC132607154, gene-LOC132629927
Solanaceae	Solanum chilense	2	SOLCI000086100, SOLCI003915600
Solanaceae	Solanum pennellii	3	gene-LOC107002489, gene-LOC107004573, gene-LOC107029266
Tamaricaceae	Reaumuria soongarica	4	STRG.1047_chr01_+, STRG.21195_chr08_-, STRG.27523_chr04_- ... STRG.32234_chr09_-
Tamaricaceae	Tamarix chinensis	4	TC00000028, TC02G1398, TC02G2553, TC12G1933
Zosteraceae	Zostera marina	4	Zosma02g00810.v3.1, Zosma02g04450.v3.1, Zosma04g16420.v3.1 ... Zosma05g03520.v3.1