Basic Information
Locus ID:
Ag3G02607
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 288096564 | 288104131 | + | Ag3G02607 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 39,277.44 Da | 37.56 | 81.40 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 341 | 4.03E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 350 | 1.3E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 303 | 343 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 149 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 281 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 237 | 9.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 97 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 196 | 54.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 280 | 9.004632 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20540.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017243718.1 | PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q6NPN9 | WD repeat-containing protein DWA2 OS=Arabidopsis thaliana OX=3702 GN=DWA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165Y078 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013911 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 31.711218 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 25.654762 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.818572 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.451089 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 12.810743 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.854763 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.049694 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.254292 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.883732 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 62.380074 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 62.908787 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.690914 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 49.676052 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 53.217712 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 45.160542 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 47.73951 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 54.950249 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 50.428631 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 38.695377 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.911957 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.122929 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 52.739914 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 57.232731 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 57.771908 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 52.320778 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 45.609798 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 44.23457 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 42.792534 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 52.321522 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.23514 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.079481 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.590614 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.786659 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 29.692896 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.665165 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.464457 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.376071 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.478464 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 32.577442 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.320544 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.697106 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.576996 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.691952 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 32.3246 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 30.836792 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.326083 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 28.103548 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 75.083397 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 74.757294 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 76.251709 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11654, jg26310 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8365 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035956 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39887, Sbi_jg55227 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14433 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014201 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl12037, Sgl12239, Sgl17330, Sgl17468 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018687, gene:ENSEOMG00000035235 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022720, CQ.Regalona.r1.1BG0001510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048540 |
| Apiaceae | Apium graveolens | 1 | Ag3G02607 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701080, gene-LOC120107714 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1077.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08261 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20540.1, AT1G76260.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008062m.g.v1.0, Thhalv10018792m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g18250.v2.2, Sp5g31400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g055110.2N, BniB04g035170.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0765 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0860 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g03620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0072s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1756 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.109 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020545 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21263 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2341, BH08.2484, CH08.2678 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0640020, gene-QOZ80_8BG0668640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0688280.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030644 |
| Poaceae | Oryza coarctata | 2 | Oco15G014330, Oco16G013600 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g44010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G223100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403409 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G003020, Chr29G000620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G478300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG036170, gene_TRIDC7BG027430 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G276100.1, TraesCS7B02G173900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb039840_P001, Zm00001eb180420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17632, nbis-gene-42844 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23417, Zma_g24509 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.527, evm.TU.LG12.1195 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.394, evm.TU.Scaffold_8_RagTag.1341 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9132 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19073 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.463 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9572 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18722 |
| Salicaceae | Populus euphratica | 2 | populus_peu15459, populus_peu33102 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628191 |
| Solanaceae | Solanum chilense | 1 | SOLCI006960700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015654 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1158 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2461, TC04G2462 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24750.v3.1 |