Basic Information
Locus ID:
Ag3G02602
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BTB POZ domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 287954813 | 287963009 | + | Ag3G02602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 92,006.75 Da | 49.10 | 86.31 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 209 | 285 | 3.92373E-13 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 349 | 423 | 4.98592E-19 | - |
| Pfam | PF07707 | BTB And C-terminal Kelch | 466 | 534 | 3.8E-7 | IPR011705 |
| Pfam | PF00651 | BTB/POZ domain | 341 | 452 | 2.6E-18 | IPR000210 |
| Pfam | PF00754 | F5/8 type C domain | 697 | 752 | 1.7E-7 | IPR000421 |
| Pfam | PF00651 | BTB/POZ domain | 201 | 299 | 1.4E-11 | IPR000210 |
| Pfam | PF12248 | Farnesoic acid 0-methyl transferase | 50 | 150 | 1.9E-22 | IPR022041 |
| SUPERFAMILY | SSF54695 | POZ domain | 199 | 298 | 3.61E-13 | IPR011333 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 649 | 804 | 9.36E-11 | IPR008979 |
| SUPERFAMILY | SSF54695 | POZ domain | 337 | 451 | 7.53E-21 | IPR011333 |
| Gene3D | G3DSA:2.60.120.260 | - | 678 | 805 | 1.6E-6 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 337 | 483 | 1.4E-26 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 197 | 316 | 2.1E-15 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 484 | 605 | 8.5E-13 | - |
| SMART | SM00875 | BACK_2 | 460 | 583 | 2.0E-11 | IPR011705 |
| SMART | SM00225 | BTB_4 | 210 | 302 | 2.2E-12 | IPR000210 |
| SMART | SM00225 | BTB_4 | 350 | 454 | 4.1E-14 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 350 | 419 | 17.437971 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 210 | 272 | 12.619065 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30600.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_017247041.1 | PREDICTED: BTB/POZ domain-containing protein At2g30600 [Daucus carota subsp. sativus] | 0 |
| Q8LEV3 | BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana OX=3702 GN=At2g30600/At2g30610 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162AC89 | BTB/POZ domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013918 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.524793 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.592602 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.325405 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.572535 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.433302 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.232203 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.647869 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.461241 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.300187 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.033129 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.842823 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.300924 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.993769 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.393425 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.086154 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.234987 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.5749 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.447978 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.939685 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.867532 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.476236 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.161831 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.71814 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.052701 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.113757 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.598951 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.392766 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.837583 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.934485 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.486773 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.581235 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.633198 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 30.352879 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.038769 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 26.878742 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.554547 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 10.660268 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.117558 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.597875 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.499678 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 24.880276 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.384971 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.362471 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.578049 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 27.263351 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 10.850334 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.015305 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.255825 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.845284 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.155858 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6055 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8649 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035916 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39869, Sbi_jg55201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14460 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014225 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12345, Sgl17629 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020317, gene:ENSEOMG00000034283 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022970, CQ.Regalona.r1.1BG0001290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048400 |
| Apiaceae | Apium graveolens | 1 | Ag3G02602 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701097 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1057.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03754 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30600.5 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016264m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g013530.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0843 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0853s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.86 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037415 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21253 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.14, BH06.5, CH06.5 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0457480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0318660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016901 |
| Poaceae | Oryza coarctata | 2 | Oco10G007270, Oco24G004280 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g27880.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G000200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301595, Pt_Chr0306587 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G024690, Chr0G024700, Chr0G024710, Chr14G000310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G773500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG067750, gene_TRIDC3BG076700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G480600.1, TraesCS3B02G525700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb379580_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53467 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28945 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.513, evm.TU.LG03.514, evm.TU.LG12.1208 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1352 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9144 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16827 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15299 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.471 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003252 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9565 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18728 |
| Salicaceae | Populus euphratica | 2 | populus_peu15473, populus_peu33116 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628201 |
| Solanaceae | Solanum chilense | 1 | SOLCI004761300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017880 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1881 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2447 |