Basic Information
Locus ID:
Ag3G02586
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
PsbP domain-containing protein 3, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 286266182 | 286271255 | + | Ag3G02586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 27,376.58 Da | 36.10 | 86.13 | -0.15 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76450.1 | Photosystem II reaction center PsbP family protein. | 0 |
| RefSeq | XP_017248016.1 | PREDICTED: psbP domain-containing protein 3, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9S720 | PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B7AJV3 | 23 kDa subunit of oxygen evolving system of photosystem II OS=Davidia involucrata OX=16924 GN=Din_024804 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.921012 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.778885 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.041322 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.294927 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.658072 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.499455 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.591476 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.058712 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.531185 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.965614 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.572208 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.029486 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.870644 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.915005 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.269215 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 36.300797 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 42.059719 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 84.344185 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 106.424049 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 71.832253 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 62.477161 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 27.490877 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.79792 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.381145 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 39.096455 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 70.505402 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 86.374153 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 111.526733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 66.966667 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 57.862072 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 113.79734 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 107.370499 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 73.443855 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 40.353218 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 60.667435 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 80.006828 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 51.712517 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 52.585876 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 160.946915 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 165.253571 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 248.184494 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.764968 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.564154 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.580069 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.019526 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.831204 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.021334 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 32.810261 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 30.351303 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 34.232388 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10900 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8321 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035787 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g013940 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39786, Sbi_jg55131 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14558 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013083 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12401, Sgl17713 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019068, gene:ENSEOMG00000033719 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023620, CQ.Regalona.r1.1BG0000600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30047970 |
| Apiaceae | Apium graveolens | 1 | Ag3G02586 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G004790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705217 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1472.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G18079 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G76450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019042m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g31620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g055490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1412 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1542 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09540 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0117s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06640 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.31 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037478 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37713 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2046, BH08.2155, CH08.2326 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0636970, gene-QOZ80_8BG0665520 |
| Poaceae | Oryza coarctata | 2 | Oco15G011050, Oco16G011500 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g40160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G187400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0403773, Pt_Chr0403800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002000, Chr29G002360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G437800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG031940, gene_TRIDC7BG022550 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G248600.1, TraesCS7B02G142700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb035340_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17422 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24354 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.289, evm.TU.LG04.464 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g23620 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30034 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16349 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.589 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015283 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20808 |
| Salicaceae | Populus euphratica | 1 | populus_peu38454 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604201 |
| Solanaceae | Solanum chilense | 1 | SOLCI007107200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005168 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1182 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2388 |