halophFGD

Basic Information

Locus ID: Ag3G02569

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Glycosyl transferase family 2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	284222157	284224120	+	Ag3G02569

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.20	63,352.35 Da	48.93	85.77	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01697	Glycosyltransferase family 92	273	487	1.0E-33	IPR008166
SUPERFAMILY	SSF53448	Nucleotide-diphospho-sugar transferases	273	368	8.86E-5	IPR029044

Best hit

Source	Best Hit ID	Description
TAIR	AT4G37420.1	Domain of unknown function (DUF23).
RefSeq	XP_017244850.1	PREDICTED: glycosyltransferase family 92 protein Os08g0121900 [Daucus carota subsp. sativus]
Swiss-Prot	Q94K98	Glycosyltransferase family 92 protein At1g27200 OS=Arabidopsis thaliana OX=3702 GN=At1g27200 PE=2 SV=2
TrEMBL	A0A165XZS0	Glycosyltransferase family 92 protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013927 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	12.307066	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.599534	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.589593	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.628197	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	9.12949	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.157543	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	8.183597	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.515821	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.684531	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	3.297426	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.938524	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.069432	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.98843	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.676767	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.263105	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.356477	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.91493	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.183388	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.33596	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.248191	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.869987	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.264772	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.161726	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.732857	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.959946	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.917547	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.589993	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.131452	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.427591	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.256961		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.149399		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.317811		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	15.919824		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.011984		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.920514		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.640921		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.563825		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.088839		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.383392	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.794586	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.52235	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.20786	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.140983	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.505906	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.057571	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.868736	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.299965	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	5.018658	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.368607	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.745263	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg19879, jg22566, jg30440, jg40430, jg5454, jg7077, jg9410
Aizoaceae	Mesembryanthemum crystallinum	2	gene_3695, gene_8343
Amaranthaceae	Atriplex hortensis	2	Ah013394, Ah035866
Amaranthaceae	Beta vulgaris	1	BVRB_6g155260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg39846, Sbi_jg42336, Sbi_jg44921, Sbi_jg55181
Amaranthaceae	Salicornia europaea	2	Seu_jg14482, Seu_jg27210
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002337, GOSA_00014244
Amaranthaceae	Suaeda glauca	4	Sgl12378, Sgl17658, Sgl31920, Sgl37198
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000259, gene:ENSEOMG00000002552 ... gene:ENSEOMG00000026665, gene:ENSEOMG00000036817, gene:ENSEOMG00000049746
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1BG0001010, CQ.Regalona.r1.6AG0006770 ... CQ.Regalona.r1.6BG0007230
Anacardiaceae	Pistacia vera	2	pistato.v30023790, pistato.v30024110
Apiaceae	Apium graveolens	4	Ag11G03523, Ag3G02569, Ag5G02172, Ag7G01969
Arecaceae	Cocos nucifera	3	COCNU_08G003460, COCNU_11G002060, scaffold007915G000030
Arecaceae	Phoenix dactylifera	4	gene-LOC103701178, gene-LOC103713611, gene-LOC103714496 ... gene-LOC103724201
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.2135.V1.1, AsparagusV1_04.577.V1.1 ... AsparagusV1_10.1738.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G00736, Ftri17G06474, Ftri18G04790, Ftri18G19374
Brassicaceae	Arabidopsis thaliana	4	AT1G27200.1, AT3G27330.1, AT4G37420.1, AT5G40720.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003629m.g.v1.0, Thhalv10007185m.g.v1.0 ... Thhalv10027280m.g.v1.0, Thhalv10028205m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g21570.v2.2, Sp2g16520.v2.2, Sp7g35080.v2.2
Brassicaceae	Brassica nigra	6	BniB02g067500.2N, BniB03g019120.2N, BniB04g007320.2N ... BniB04g039560.2N, BniB05g001520.2N, BniB06g059600.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1944, Ceq03G1139, Ceq07G0876
Casuarinaceae	Casuarina glauca	3	Cgl02G2017, Cgl03G1232, Cgl07G0922
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g12990, gene.Cymno10g08230
Dunaliellaceae	Dunaliella salina	2	Dusal.0075s00016.v1.0, Dusal.0488s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate08g17390, gene.Thate09g12410
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.881, evm.TU.LG05.207, evm.TU.LG06.75
Plantaginaceae	Plantago ovata	3	Pov_00023144, Pov_00024225, Pov_00027716
Plumbaginaceae	Limonium bicolor	2	Lb3G19875, Lb6G31768
Poaceae	Echinochloa crus-galli	7	AH06.3039, AH08.191, BH06.2826, BH08.162, CH08.52 ... Contig1701.3, Contig181.183
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_8AG0615900, gene-QOZ80_8BG0643190
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.4HG0342210.1.CDS1 ... HORVU.MOREX.r3.4HG0342260.1.CDS1, HORVU.MOREX.r3.4HG0342280.1.CDS1, HORVU.MOREX.r3.4HG0343590.1.CDS1, HORVU.MOREX.r3.4HG0343650.1.CDS1, HORVU.MOREX.r3.6HG0573570.1.CDS1, HORVU.MOREX.r3.6HG0617970.1.CDS1, HORVU.MOREX.r3.7HG0703730.1, HORVU.MOREX.r3.7HG0751450.1.CDS1
Poaceae	Lolium multiflorum	13	gene-QYE76_002279, gene-QYE76_018629, gene-QYE76_018635 ... gene-QYE76_021072, gene-QYE76_021238, gene-QYE76_021978, gene-QYE76_028067, gene-QYE76_033503, gene-QYE76_037085, gene-QYE76_037319, gene-QYE76_046903, gene-QYE76_048234, gene-QYE76_067982
Poaceae	Oryza coarctata	3	Oco12G017900, Oco15G001020, Oco16G001180
Poaceae	Oryza sativa	2	LOC_Os06g51210.1, LOC_Os08g02850.1
Poaceae	Paspalum vaginatum	2	gene-BS78_07G025600, gene-BS78_10G263400
Poaceae	Puccinellia tenuiflora	13	Pt_Chr0100010, Pt_Chr0100011, Pt_Chr0202293, Pt_Chr0206395 ... Pt_Chr0206434, Pt_Chr0207194, Pt_Chr0303783, Pt_Chr0303792, Pt_Chr0402594, Pt_Chr0603583, Pt_Chr0603669, Pt_Chr0603672, Pt_Chr0702845
Poaceae	Sporobolus alterniflorus	6	Chr0G007260, Chr0G021780, Chr10G022470, Chr17G000430 ... Chr20G013000, Chr29G012340
Poaceae	Thinopyrum elongatum	6	Tel6E01G324300, Tel6E01G334500, Tel6E01G336800 ... Tel6E01G571100, Tel7E01G539800, Tel7E01G959200
Poaceae	Triticum dicoccoides	12	gene_TRIDC6AG023390, gene_TRIDC6AG023730 ... gene_TRIDC6AG023990, gene_TRIDC6AG048400, gene_TRIDC6BG029150, gene_TRIDC6BG029270, gene_TRIDC6BG031730, gene_TRIDC6BG056570, gene_TRIDC7AG043790, gene_TRIDC7AG076580, gene_TRIDC7BG035060, gene_TRIDC7BG073360
Poaceae	Triticum aestivum	21	TraesCS4A02G230900.1.cds1, TraesCS4A02G231000.1.cds1 ... TraesCS4D02G075500.1.cds1, TraesCS4D02G083000.1.cds1, TraesCS6A02G165300.1, TraesCS6A02G166400.1, TraesCS6A02G322700.1.cds1, TraesCS6B02G193800.1.cds1, TraesCS6B02G193900.1.cds1, TraesCS6B02G195000.1, TraesCS6B02G205700.1.cds1, TraesCS6B02G353400.1.cds1, TraesCS6D02G155000.1, TraesCS6D02G165900.1.cds1, TraesCS6D02G302600.1.cds1, TraesCS7A02G313700.1, TraesCS7A02G550900.1.cds1, TraesCS7B02G214400.1, TraesCS7B02G474300.1.cds1, TraesCS7D02G310300.1, TraesCS7D02G536800.1.cds1
Poaceae	Zea mays	2	Zm00001eb173440_P001, Zm00001eb271980_P001
Poaceae	Zoysia japonica	1	nbis-gene-41463
Poaceae	Zoysia macrostachya	2	Zma_g23545, Zma_g31172
Portulacaceae	Portulaca oleracea	5	evm.TU.LG03.333, evm.TU.LG12.1372, evm.TU.LG13.280 ... evm.TU.LG18.856, evm.TU.LG20.1020
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g01220, gene.Posoc06g15020, gene.Posoc06g15030
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.687, evm.TU.Scaffold_3_RagTag.1982 ... evm.TU.Scaffold_6_RagTag.74, evm.TU.Scaffold_8_RagTag.1358
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-26872, nbisL1-mrna-9150
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-18191, nbisL1-mrna-19349, nbisL1-mrna-4702 ... nbisL1-mrna-6797
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15295, nbisL1-mrna-15696, nbisL1-mrna-3133 ... nbisL1-mrna-66
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000001l.205, add.evm.TU.utg000018l.86 ... evm.TU.utg000011l.53, evm.TU.utg000019l.29
Rhizophoraceae	Kandelia obovata	2	Maker00001634, Maker00007146
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11999, nbisL1-mrna-20534, nbisL1-mrna-21204 ... nbisL1-mrna-21505
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17517, nbisL1-mrna-17816, nbisL1-mrna-18732
Salicaceae	Populus euphratica	7	populus_peu01177, populus_peu07758, populus_peu15482 ... populus_peu21889, populus_peu33124, populus_peu37634, populus_peu37710
Solanaceae	Lycium barbarum	4	gene-LOC132601899, gene-LOC132622048, gene-LOC132624038 ... gene-LOC132641444
Solanaceae	Solanum chilense	4	SOLCI000009200, SOLCI005052300, SOLCI005853000 ... SOLCI007143200
Solanaceae	Solanum pennellii	4	gene-LOC107006574, gene-LOC107009523, gene-LOC107017078 ... gene-LOC107018609
Tamaricaceae	Reaumuria soongarica	2	STRG.13995_chr05_-, STRG.31448_chr11_+
Tamaricaceae	Tamarix chinensis	4	TC01G3219, TC01G3220, TC03G0537, TC03G1233
Zosteraceae	Zostera marina	2	Zosma05g08070.v3.1, Zosma05g23580.v3.1