Basic Information
Locus ID:
Ag3G02556
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Large proline-rich protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 281807862 | 281814881 | - | Ag3G02556 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 95,512.40 Da | 50.44 | 77.73 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 26 | 96 | 7.0E-22 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 11 | 110 | 2.3E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 21 | 109 | 4.3E-27 | - |
| SMART | SM00213 | ubq_7 | 24 | 95 | 3.6E-22 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 24 | 99 | 22.743614 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 50 | 75 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 55 | 75 | 4.4E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 76 | 97 | 4.4E-7 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 600 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 813 | 840 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42220.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_017247459.1 | PREDICTED: large proline-rich protein BAG6 isoform X1 [Daucus carota subsp. sativus] | 0 |
| D5LXJ0 | Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165Y0K2 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 80.43042 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 70.631508 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 90.920929 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 85.314278 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 88.742455 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 115.800484 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 91.138336 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 134.792694 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 57.456154 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 60.942986 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 55.061882 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 57.457008 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 57.250187 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 55.518948 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.461815 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.810297 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.236673 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.867907 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.026464 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 31.615097 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 34.884922 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.127319 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.165485 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.838551 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 31.144939 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.922039 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.548498 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 30.462868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.404865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.353848 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.248432 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.9454 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 80.805565 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 50.693214 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 94.678482 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 28.176405 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 23.348167 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 21.741673 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 26.051315 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.283962 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.755248 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 80.799339 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 119.536896 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 77.041992 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 45.583031 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 48.550011 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 41.155544 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.686028 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 48.083778 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.574081 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11686 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8683 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035970 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217800 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10192, Sbi_jg39933, Sbi_jg55268 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14402, Seu_jg222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014171 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl12070, Sgl12071, Sgl12266, Sgl17365, Sgl17366, Sgl17496 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000019745, gene:ENSEOMG00000032958 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022380, CQ.Regalona.r1.1BG0001890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30048680, pistato.v30282420 |
| Apiaceae | Apium graveolens | 1 | Ag3G02556 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G000450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705892 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.291.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G01361, Ftri16G04901, Ftri2G05859 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003631m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08390.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0796 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0881 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g14500, gene.Cymno13g04240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1395, nbisL1-mrna-1757 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.125 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017370, Pov_00020558 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02836 |
| Poaceae | Echinochloa crus-galli | 2 | AH08.2254, BH08.2388 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0639330, gene-QOZ80_8BG0667960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0541060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019226 |
| Poaceae | Oryza coarctata | 2 | Oco13G007900, Oco14G008410 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G213300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200736, Pt_Chr0204747 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G018490, Chr17G017610, Chr20G002490, Chr29G000970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G050200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4BG021580, gene_TRIDC6AG001500 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G013700.2, TraesCS6A02G013800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198450_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17574 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.541, evm.TU.LG12.1181 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g30320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1334 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9124 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21159 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15315 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.456 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003017 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3294 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11179 |
| Salicaceae | Populus euphratica | 3 | populus_peu15439, populus_peu15440, populus_peu33080 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628175 |
| Solanaceae | Solanum chilense | 1 | SOLCI002187400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017836 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1865 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2490, TC09G1118 |
| Zosteraceae | Zostera marina | 2 | Zosma03g06660.v3.1, Zosma05g28000.v3.1 |