HalophFGD

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Basic Information
Locus ID: Ag3G02552
Species & Taxonomic ID: Apium graveolens & 4045
Genome Assembly: GCA_009905375.1
Description: serine threonine-protein kinase
Maps and Mapping Data
Chromosome Start End Strand ID
chr3 281643742 281653235 + Ag3G02552
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.96 64,303.87 Da 51.00 90.47 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd13999 STKc_MAP3K-like 293 536 1.78959E-137 -
Pfam PF07714 Protein tyrosine and serine/threonine kinase 287 535 1.4E-72 IPR001245
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 266 534 4.45E-85 IPR011009
SUPERFAMILY SSF55021 ACT-like 174 246 1.04E-9 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 366 567 3.0E-60 -
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 276 365 5.2E-28 -
SMART SM00220 serkin_6 287 537 7.2E-69 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 287 537 45.883923 IPR000719
ProSiteProfiles PS51671 ACT domain profile. 176 255 12.367432 IPR002912
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 404 416 - IPR008271
PRINTS PR00109 Tyrosine kinase catalytic domain signature 361 374 9.9E-18 IPR001245
PRINTS PR00109 Tyrosine kinase catalytic domain signature 507 529 9.9E-18 IPR001245
PRINTS PR00109 Tyrosine kinase catalytic domain signature 398 416 9.9E-18 IPR001245
PRINTS PR00109 Tyrosine kinase catalytic domain signature 463 485 9.9E-18 IPR001245
PRINTS PR00109 Tyrosine kinase catalytic domain signature 444 454 9.9E-18 IPR001245
MobiDBLite mobidb-lite consensus disorder prediction 547 573 - -
MobiDBLite mobidb-lite consensus disorder prediction 557 573 - -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K00799 (glutathione S-transferase [EC:2.5.1.18])
Pathway:
ko00480 (Glutathione metabolism) map00480 (Glutathione metabolism) ko00980 (Metabolism of xenobiotics by cytochrome P450) map00980 (Metabolism of xenobiotics by cytochrome P450) ko00982 (Drug metabolism - cytochrome P450) map00982 (Drug metabolism - cytochrome P450) ko00983 (Drug metabolism - other enzymes) map00983 (Drug metabolism - other enzymes) ko01524 (Platinum drug resistance) map01524 (Platinum drug resistance)
Reaction:
R03522 (RX + Glutathione <=> Halide + R-S-Glutathione) R07002 ((1R,2S)-Naphthalene 1,2-oxide + Glutathione <=> (1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene) R07003 ((1S,2R)-Naphthalene 1,2-oxide + Glutathione <=> (1R)-Glutathionyl-(2R)-hydroxy-1,2-dihydronaphthalene) R07004 ((1S,2R)-Naphthalene 1,2-oxide + Glutathione <=> (1S)-Hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene) R07023 (1-Nitronaphthalene-7,8-oxide + Glutathione <=> 1-Nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene) R07024 (1-Nitronaphthalene-7,8-oxide + Glutathione <=> 1-Nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene) R07025 (1-Nitronaphthalene-5,6-oxide + Glutathione <=> 1-Nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene) R07026 (1-Nitronaphthalene-5,6-oxide + Glutathione <=> 1-Nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene) R07069 (Bromobenzene-3,4-oxide + Glutathione <=> 3,4-Dihydro-3-hydroxy-4-S-glutathionyl bromobenzene) R07070 (Bromobenzene-2,3-oxide + Glutathione <=> 2,3-Dihydro-2-S-glutathionyl-3-hydroxy bromobenzene) R07083 (Benzo[a]pyrene-4,5-oxide + Glutathione <=> 4,5-Dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene) R07084 (Benzo[a]pyrene-7,8-dihydrodiol + Glutathione <=> 7,8-Dihydro-7-hydroxy-8-S-glutathionyl-benzo[a]pyrene + H2O) R07091 (2,2-Dichloroacetaldehyde + Glutathione <=> S-(2,2-Dichloro-1-hydroxy)ethyl glutathione) R07092 (1,1-Dichloroethylene epoxide + Glutathione <=> 2-(S-Glutathionyl)acetyl chloride + Hydrochloric acid) R07093 (Chloroacetyl chloride + Glutathione <=> S-(2-Chloroacetyl)glutathione + Hydrochloric acid) R07094 (2-(S-Glutathionyl)acetyl chloride + Glutathione <=> 2-(S-Glutathionyl)acetyl glutathione + Hydrochloric acid) R07100 (Trichloroethene + Glutathione <=> S-(1,2-Dichlorovinyl)glutathione + Hydrochloric acid) R07113 (1,2-Dibromoethane + Glutathione + H+ <=> Glutathione episulfonium ion + 2 Hydrobromic acid) R07116 (2-Bromoacetaldehyde + Glutathione <=> S-(Formylmethyl)glutathione + Hydrobromic acid) R08280 (Aldophosphamide + Glutathione <=> 4-Glutathionyl cyclophosphamide + H2O) R09409 (Aflatoxin B1-exo-8,9-epoxide + Glutathione <=> Aflatoxin B1exo-8,9-epoxide-GSH) R11905 (Hepatotoxins + Glutathione <=> R-S-Glutathione)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G38470.1 ACT-like protein tyrosine kinase family protein. 0
RefSeq XP_017243502.1 PREDICTED: serine/threonine-protein kinase STY46-like [Daucus carota subsp. sativus] 0
Swiss-Prot F4JTP5 Serine/threonine-protein kinase STY46 OS=Arabidopsis thaliana OX=3702 GN=STY46 PE=1 SV=1 0
TrEMBL A0A5J5B5D5 Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_027074 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
PRJNA723697SRX106922524.841449Shengqin NO.2seedS1-1S1-1initial formation stage (S1)
PRJNA723697SRX106922543.564998Shengqin NO.2seedS1-3S1-3initial formation stage (S1)
PRJNA723697SRX106922555.625172Shengqin NO.2seedS3-1S3-1middle development stage (S3)
PRJNA723697SRX106922563.964764Shengqin NO.2seedS3-2S3-2middle development stage (S3)
PRJNA723697SRX106922574.791966Shengqin NO.2seedS3-3S3-3middle development stage (S3)
PRJNA723697SRX106922585.31687Shengqin NO.2seedS5-1S5-1maturation stage (S5)
PRJNA723697SRX106922595.825477Shengqin NO.2seedS5-2S5-2maturation stage (S5)
PRJNA723697SRX106922604.546324Shengqin NO.2seedS5-3S5-3maturation stage (S5)
PRJNA884666SRX177292720.379556celeryantherW99A-r1male sterile line 
PRJNA884666SRX177292730.551714celeryantherW99A-r2male sterile line 
PRJNA884666SRX177292740.774005celeryantherW99A-r3male sterile line 
PRJNA884666SRX177292750.769566celeryantherW99B-r1maintainer line
PRJNA884666SRX177292762.01432celeryantherW99B-r2maintainer line
PRJNA884666SRX177292771.834501celeryantherW99B-r3maintainer line
PRJNA884180SRX177438890var. secalinum YablochnycollenchymaCol_S1_rep1-1
PRJNA884180SRX177480560.251983var. secalinum YablochnycollenchymaCol_S1_rep3biological replicate 3
PRJNA884180SRX177480570.753312var. secalinum YablochnycollenchymaCol_S1_rep4biological replicate 4
PRJNA884180SRX177486781.584998var. secalinum YablochnyparenchymaPar_S1_rep1Biological replicate 1
PRJNA884180SRX177486790.403845var. secalinum YablochnyparenchymaPar_S1_rep2Biological replicate 2
PRJNA884180SRX177486801.495711var. secalinum YablochnyparenchymaPar_S1_rep3Biological replicate 3
PRJNA884180SRX177486813.059679var. secalinum YablochnyparenchymaPar_S1_rep4Biological replicate 4
PRJNA884180SRX177488985.909797var. secalinum Yablochnyvascular bundleVas_S1_rep1Biological replicate 1
PRJNA884180SRX1774889915.540894var. secalinum Yablochnyvascular bundleVas_S1_rep2Biological replicate 2
PRJNA884180SRX177489005.05206var. secalinum Yablochnyvascular bundleVas_S1_rep3Biological replicate 3
PRJNA884180SRX177489015.906177var. secalinum Yablochnyvascular bundleVas_S1_rep4Biological replicate 4
PRJNA884180SRX177491291.479955var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep1Biological replicate 1
PRJNA884180SRX177491301.952988var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep2Biological replicate 2
PRJNA884180SRX177491311.834663var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep3Biological replicate 3
PRJNA884180SRX177491322.200834var. secalinum Yablochnypart of the celery petiole without collenchyma strandsCollenchyma-free_S1_rep4Biological replicate 4
PRJNA1124269SRX249364110.300885leafCK1replicate=biological replicate1
PRJNA1124269SRX249364120.372659leafCK2replicate=biological replicate2
PRJNA1124269SRX249364130.211636leafCK3replicate=biological replicate3
PRJNA1124269SRX249364140.86094leafD1replicate=biological replicate1
PRJNA1124269SRX249364150.680748leafD2replicate=biological replicate2
PRJNA1124269SRX249364161.248504leafD3replicate=biological replicate3
PRJNA1124269SRX249364170.953612leafMD1replicate=biological replicate1
PRJNA1124269SRX249364180.318803leafMD2replicate=biological replicate2
PRJNA1124269SRX249364190.441996leafMD3replicate=biological replicate3
PRJNA387092SRX28333090.951398shanghaihuangxinleafleaves between 0.5 and 1 cm in breadth, folded;stage 2
PRJNA387092SRX28333212.416663shanghaihuangxinleafleaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sionstage 5
PRJNA387092SRX28333231.88682shanghaihuangxinleafleaves >3 cm, unfolded, with clearstem extensionstage 7
PRJNA543957SRX58795980.055002Zhangzhou lvqingstemSe3100 ppm Na2SeO4
PRJNA543957SRX58795990.318394Zhangzhou lvqingstemSe2100 ppm Na2SeO4
PRJNA543957SRX58796000.363361Zhangzhou lvqingstemMock2mock
PRJNA543957SRX58796011.874524Zhangzhou lvqingstemMock1mock
PRJNA543957SRX58796020.122725Zhangzhou lvqingstemSe1100 ppm Na2SeO4
PRJNA543957SRX58796032.356768Zhangzhou lvqingstemMock3mock
PRJNA609149SRX78159172.216825Jinnan Shiqinflower budearly flower budearly flower bud
PRJNA609149SRX78159182.269649Jinnan Shiqinflower budmiddle flower budmiddle flower bud
PRJNA609149SRX78159192.546722Jinnan Shiqinflower budearly flowering periodearly flowering period
Network
🔍 Co-expression Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg11701, jg23009, jg26123, jg855
Aizoaceae Mesembryanthemum crystallinum 2 gene_21928, gene_23644
Amaranthaceae Atriplex hortensis 2 Ah009613, Ah012672
Amaranthaceae Beta vulgaris 2 BVRB_6g152560, BVRB_9g213400
Amaranthaceae Salicornia bigelovii 4 Sbi_jg12286, Sbi_jg42379, Sbi_jg44960, Sbi_jg47272
Amaranthaceae Salicornia europaea 2 Seu_jg21540, Seu_jg27178
Amaranthaceae Suaeda aralocaspica 2 GOSA_00002312, GOSA_00018843
Amaranthaceae Suaeda glauca 5 Sgl31891, Sgl37169, Sgl37235, Sgl55518, Sgl60737
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000002031, gene:ENSEOMG00000003941 ...
gene:ENSEOMG00000019814, gene:ENSEOMG00000027751, gene:ENSEOMG00000039110, gene:ENSEOMG00000052192
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.6AG0008040, CQ.Regalona.r1.6BG0009000 ...
CQ.Regalona.r1.7BG0002420, CQ.Regalona.r1.9AG0022240
Anacardiaceae Pistacia vera 3 pistato.v30048850, pistato.v30211670, pistato.v30277570
Apiaceae Apium graveolens 3 Ag3G02552, Ag6G02383, Ag7G01791
Arecaceae Cocos nucifera 2 COCNU_08G009150, COCNU_09G004840
Arecaceae Phoenix dactylifera 3 gene-LOC103701060, gene-LOC103708687, gene-LOC103722908
Asparagaceae Asparagus officinalis 2 AsparagusV1_01.1114.V1.1, AsparagusV1_07.2397.V1.1
Asteraceae Flaveria trinervia 5 Ftri13G32896, Ftri18G15319, Ftri18G29776, Ftri4G02625 ...
Ftri5G04777
Brassicaceae Arabidopsis thaliana 3 AT2G17700.1, AT4G35780.1, AT4G38470.1
Brassicaceae Eutrema salsugineum 3 Thhalv10022635m.g.v1.0, Thhalv10024738m.g.v1.0 ...
Thhalv10024820m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp3g31090.v2.2, Sp7g33540.v2.2, Sp7g37310.v2.2
Brassicaceae Brassica nigra 6 BniB02g014020.2N, BniB03g013310.2N, BniB03g015800.2N ...
BniB03g065790.2N, BniB04g026130.2N, BniB05g000860.2N
Casuarinaceae Casuarina equisetifolia 3 Ceq03G0815, Ceq06G0097, Ceq07G1776
Casuarinaceae Casuarina glauca 3 Cgl03G0895, Cgl06G0107, Cgl07G1923
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno09g00760, gene.Cymno10g07940, gene.Cymno11g10700
Dunaliellaceae Dunaliella salina 1 Dusal.1229s00001.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate02g12640, gene.Thate05g02030, gene.Thate08g17620
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-5643
Nitrariaceae Nitraria sibirica 2 evm.TU.LG02.2831, evm.TU.LG08.359
Plantaginaceae Plantago ovata 2 Pov_00001725, Pov_00036963
Plumbaginaceae Limonium bicolor 3 Lb1G06109, Lb3G17284, Lb3G17286
Poaceae Echinochloa crus-galli 11 AH03.2795, AH03.2963, AH07.90, BH03.2947, BH06.2792 ...
BH07.204, BH07.205, CH03.3148, CH03.3329, CH03.4667, Contig181.218
Poaceae Eleusine coracana subsp. coracana 8 gene-QOZ80_2AG0099520, gene-QOZ80_2BG0152940 ...
gene-QOZ80_6AG0527620, gene-QOZ80_6AG0551200, gene-QOZ80_6BG0481530, gene-QOZ80_6BG0504780, gene-QOZ80_7AG0566900, gene-QOZ80_7BG0598310
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0501600.1, HORVU.MOREX.r3.6HG0549970.1
Poaceae Lolium multiflorum 3 gene-QYE76_007335, gene-QYE76_019755, gene-QYE76_041394
Poaceae Oryza coarctata 7 Oco03G000990, Oco04G000910, Oco12G017750, Oco13G007120 ...
Oco14G007690, Oco17G010920, Oco18G010840
Poaceae Oryza sativa 4 LOC_Os02g02780.1, LOC_Os06g50920.1, LOC_Os07g29330.1 ...
LOC_Os09g37230.1
Poaceae Paspalum vaginatum 5 gene-BS78_02G261100, gene-BS78_02G261200 ...
gene-BS78_02G276000, gene-BS78_04G014800, gene-BS78_10G259900
Poaceae Puccinellia tenuiflora 4 Pt_Chr0207057, Pt_Chr0306610, Pt_Chr0306613, Pt_Chr0701125
Poaceae Sporobolus alterniflorus 13 Chr05G000300, Chr06G035920, Chr0G004450, Chr0G027130 ...
Chr10G014620, Chr11G007620, Chr14G009750, Chr15G027090, Chr19G006200, Chr21G009880, Chr24G005230, Chr27G010650, Chr28G004440
Poaceae Thinopyrum elongatum 3 Tel2E01G442400, Tel5E01G535800, Tel6E01G168400
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG049770, gene_TRIDC5BG053430 ...
gene_TRIDC6AG008850, gene_TRIDC6BG013260
Poaceae Triticum aestivum 6 TraesCS5A02G338800.1, TraesCS5B02G337300.1 ...
TraesCS5D02G343000.1, TraesCS6A02G071900.1, TraesCS6B02G096400.1, TraesCS6D02G070000.1
Poaceae Zea mays 4 Zm00001eb104040_P001, Zm00001eb230270_P001 ...
Zm00001eb319970_P003, Zm00001eb321250_P002
Poaceae Zoysia japonica 3 nbis-gene-35176, nbis-gene-52354, nbis-gene-9534
Poaceae Zoysia macrostachya 4 Zma_g29969, Zma_g31163, Zma_g32145, Zma_g5125
Portulacaceae Portulaca oleracea 4 evm.TU.LG02.1780, evm.TU.LG07.1982, evm.TU.LG09.152 ...
evm.TU.LG15.1159
Posidoniaceae Posidonia oceanica 4 gene.Posoc06g14500, gene.Posoc06g16960, gene.Posoc08g03360 ...
gene.Posoc08g05330
Rhizophoraceae Bruguiera sexangula 3 evm.TU.Scaffold_2_RagTag.56, evm.TU.Scaffold_6_RagTag.2160 ...
evm.TU.Scaffold_7_RagTag.397
Rhizophoraceae Carallia pectinifolia 4 nbisL1-mrna-16973, nbisL1-mrna-18877, nbisL1-mrna-5149 ...
nbisL1-mrna-5215
Rhizophoraceae Ceriops tagal 3 nbisL1-mrna-10976, nbisL1-mrna-13387, nbisL1-mrna-14891
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-11670, nbisL1-mrna-6901, nbisL1-mrna-9319
Rhizophoraceae Kandelia candel 3 evm.TU.utg000002l.814, evm.TU.utg000009l.1203 ...
evm.TU.utg000011l.1327
Rhizophoraceae Kandelia obovata 3 Maker00005810, Maker00007184, Maker00010669
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-14102, nbisL1-mrna-15702, nbisL1-mrna-8775
Rhizophoraceae Rhizophora mangle 4 nbisL1-mrna-20092, nbisL1-mrna-21186, nbisL1-mrna-24112 ...
nbisL1-mrna-2955
Salicaceae Populus euphratica 5 populus_peu08660, populus_peu14066, populus_peu15423 ...
populus_peu33064, populus_peu36692
Solanaceae Lycium barbarum 5 gene-LOC132599359, gene-LOC132604167, gene-LOC132606664 ...
gene-LOC132622086, gene-LOC132624902
Solanaceae Solanum chilense 4 SOLCI000015600, SOLCI003460400, SOLCI003721200 ...
SOLCI003818900
Solanaceae Solanum pennellii 4 gene-LOC107002556, gene-LOC107006677, gene-LOC107008519 ...
gene-LOC107011222
Tamaricaceae Reaumuria soongarica 3 STRG.20750_chr08_-, gene_2340, gene_7950
Tamaricaceae Tamarix chinensis 3 TC04G1115, TC10G0180, TC12G0808
Zosteraceae Zostera marina 2 Zosma05g23820.v3.1, Zosma06g11590.v3.1
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