Basic Information
Locus ID:
Ag3G02538
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 280926521 | 280927529 | + | Ag3G02538 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 30,006.35 Da | 42.70 | 79.56 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 221 | 259 | 6.0E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 269 | 8.8E-9 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 223 | 258 | 8.919052 | IPR001841 |
| Coils | Coil | Coil | 128 | 148 | - | - |
| Coils | Coil | Coil | 170 | 190 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017245723.1 | PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5J5B441 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_027107 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.956879 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.531965 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.149474 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.607492 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.554461 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.936157 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.268036 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.131319 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.564011 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.10615 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.067139 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.109364 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.09385 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.332767 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.412508 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.316195 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.44207 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg22987, jg26135, jg28876, jg30368, jg6367, jg886 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26689, gene_8439 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009659, Ah036192 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g214010 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12235, Sbi_jg40014, Sbi_jg47203, Sbi_jg55340 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14323, Seu_jg21476 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00014077, GOSA_00020446, GOSA_00025957 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl12169, Sgl17541, Sgl55463, Sgl56107, Sgl61440 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016020, gene:ENSEOMG00000036878 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0021410, CQ.Regalona.r1.1BG0003060 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30049130, pistato.v30110070, pistato.v30111600 ... |
| Apiaceae | Apium graveolens | 3 | Ag11G03559, Ag3G02538, Ag7G01810 |
| Arecaceae | Cocos nucifera | 6 | COCNU_02G016270, COCNU_07G002680, COCNU_10G001850 ... |
| Arecaceae | Phoenix dactylifera | 9 | gene-LOC103703229, gene-LOC103712352, gene-LOC103712804 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1551.V1.1, AsparagusV1_04.1069.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri5G08994, Ftri8G18247, Ftri9G03065 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027575m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32840.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g087350.2N, BniB03g021030.2N, BniB05g003290.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1712 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1857 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno07g10770, gene.Cymno08g01030, gene.Cymno14g06220 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate04g02880, gene.Thate05g02190, gene.Thate08g19030 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.178, evm.TU.LG08.319 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00001664, Pov_00007350, Pov_00020646 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08457, Lb3G17635 |
| Poaceae | Echinochloa crus-galli | 31 | AH01.5312, AH01.5316, AH01.5320, AH01.5321, AH04.1522 ... |
| Poaceae | Eleusine coracana subsp. coracana | 13 | gene-QOZ80_2AG0132460, gene-QOZ80_2AG0132470 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0164840.1, HORVU.MOREX.r3.2HG0164850.1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_043742, gene-QYE76_043752, gene-QYE76_043757 ... |
| Poaceae | Oryza coarctata | 12 | Oco03G011310, Oco04G011700, Oco07G004860, Oco07G004870 ... |
| Poaceae | Oryza sativa | 7 | LOC_Os02g32420.1, LOC_Os04g32980.1, LOC_Os04g33030.1 ... |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_02G102800, gene-BS78_02G116100, gene-BS78_K157600 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703432, Pt_Chr0703434 |
| Poaceae | Sporobolus alterniflorus | 24 | Chr06G010840, Chr06G010850, Chr07G016550, Chr09G015510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G516700, Tel2E01G516800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG042020, gene_TRIDC2AG042030 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G290000.1, TraesCS2A02G290100.1 ... |
| Poaceae | Zea mays | 13 | Zm00001eb084550_P001, Zm00001eb084560_P001 ... |
| Poaceae | Zoysia japonica | 13 | nbis-gene-18926, nbis-gene-18928, nbis-gene-18931 ... |
| Poaceae | Zoysia macrostachya | 12 | Zma_g13594, Zma_g13595, Zma_g16391, Zma_g16392, Zma_g16393 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1820, evm.TU.LG08.1121, evm.TU.LG09.119 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g07990, gene.Posoc05g00230, gene.Posoc05g07190 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2322, evm.TU.Scaffold_2_RagTag.88 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5121, nbisL1-mrna-6060 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10996, nbisL1-mrna-17149 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3241 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.1187, evm.TU.utg000016l.60 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006258, Maker00017359 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14123, nbisL1-mrna-4617 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21160, nbisL1-mrna-22462 |
| Salicaceae | Populus euphratica | 4 | populus_peu08697, populus_peu15383, populus_peu33031 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599333, gene-LOC132605265 |
| Solanaceae | Solanum chilense | 2 | SOLCI006584000, SOLCI007490200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107001770, gene-LOC107027228 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.31311_chr11_+, gene_7964 |
| Tamaricaceae | Tamarix chinensis | 4 | TC10G0138, TC10G0139, TC12G0766, TC12G0767 |
| Zosteraceae | Zostera marina | 2 | Zosma05g08660.v3.1, Zosma05g08670.v3.1 |