Basic Information
Locus ID:
Ag3G02488
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 278685058 | 278689115 | - | Ag3G02488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 18,599.94 Da | 58.77 | 69.88 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 19 | 155 | 6.6E-25 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 6 | 140 | 3.11E-24 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 13 | 162 | 1.9E-32 | IPR016135 |
| SMART | SM00212 | ubc_7 | 18 | 162 | 6.1E-27 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 15 | 162 | 25.205116 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45050.1 | Ubiquitin-conjugating enzyme family protein. member of ubiquitin-conjugating E2-proteins | 0 |
| RefSeq | XP_017244426.1 | PREDICTED: probable ubiquitin-conjugating enzyme E2 18 isoform X2 [Daucus carota subsp. sativus] | 0 |
| P42743 | Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana OX=3702 GN=UBC15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165Y4A2 | UBC core domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013835 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.981216 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.936329 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.630558 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.980066 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.206453 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.201564 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.180479 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.68868 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.379057 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.9278 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.837243 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.5453 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.940119 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.047094 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.604589 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.575789 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.501882 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.008536 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.496118 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.537158 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.27357 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.106556 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 26.157984 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.796539 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.205121 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.702686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.304366 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.225778 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.422409 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 16.861069 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.79398 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.829065 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.329437 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.903587 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.460768 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 28.137108 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 34.049347 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 27.938454 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.217302 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.598183 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.289351 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 21.130661 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.598008 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.286228 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.622251 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.837223 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.419607 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.437361 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.221964 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.823454 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11840, jg22911, jg6324 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16799, gene_23081 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023469 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g006710, BVRB_6g129530 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14171, Sbi_jg53434 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10075 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000025, GOSA_00025383 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl11507, Sgl11512, Sgl11594, Sgl16963, Sgl17091, Sgl34783 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000003670, gene:ENSEOMG00000012872 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0008850, CQ.Regalona.r1.6BG0028730 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30046990, pistato.v30209430 |
| Apiaceae | Apium graveolens | 6 | Ag10G00051, Ag3G02195, Ag3G02488, Ag3G02490, Ag8G01010 ... |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G012980, COCNU_08G000070 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103710168, gene-LOC103712016, gene-LOC103723967 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2005.V1.1, AsparagusV1_07.2222.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G31393, Ftri18G16015, Ftri1G06640, Ftri1G15397 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G45050.1, AT1G75440.1, AT4G36410.1, AT5G42990.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10003273m.g.v1.0, Thhalv10011837m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g33870.v2.2, Sp2g07750.v2.2, Sp5g30590.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g060530.2N, BniB02g087950.2N, BniB03g053980.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0978, Ceq06G0256 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1051, Cgl03G1064, Cgl06G0282 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12280 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0237s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g14260, gene.Thate02g41520 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-10486, nbisL1-mrna-6573, nbisL1-mrna-8882 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2414, evm.TU.LG06.625 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002507 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06217, Lb2G13339, Lb8G36459 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1039, AH05.4216, BH01.1179, BH05.4305, CH01.1231 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0221530, gene-QOZ80_3BG0266670 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0334410.1, HORVU.MOREX.r3.5HG0420410.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000224, gene-QYE76_063081 |
| Poaceae | Oryza coarctata | 4 | Oco05G020230, Oco06G021020, Oco23G011290, Oco24G011090 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g47770.1, LOC_Os12g44000.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G124800, gene-BS78_08G169000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104687, Pt_Chr0104690, Pt_Chr0704900 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G008260, Chr04G020020, Chr06G020970, Chr07G024740 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G050600, Tel5E01G013900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG044490, gene_TRIDC4BG004470 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G288800.1, TraesCS4B02G026000.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb033000_P001, Zm00001eb051860_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15754, nbis-gene-44412 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g25414, Zma_g26204, Zma_g3064 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.1676, evm.TU.LG05.394, evm.TU.LG10.1164 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03770 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.197, evm.TU.Scaffold_6_RagTag.2062 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17063, nbisL1-mrna-422, nbisL1-mrna-447 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11776, nbisL1-mrna-496 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11747, nbisL1-mrna-5947 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1256, evm.TU.utg000019l.1121 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007532, Maker00012653 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15624, nbisL1-mrna-6520 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2371, nbisL1-mrna-3047 |
| Salicaceae | Populus euphratica | 3 | populus_peu14182, populus_peu15269, populus_peu23638 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622766, gene-LOC132628064 |
| Solanaceae | Solanum chilense | 1 | SOLCI000092300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008819, gene-LOC107015904 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4460_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2476 |
| Zosteraceae | Zostera marina | 1 | Zosma05g22880.v3.1 |