Basic Information
Locus ID:
Ag3G02458
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
UBP25
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 277248770 | 277264009 | + | Ag3G02458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 80,349.38 Da | 55.60 | 72.72 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 26 | 346 | 9.29334E-147 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 28 | 345 | 4.6E-50 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 23 | 349 | 4.12E-90 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 7 | 348 | 1.4E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 27 | 348 | 50.632042 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 28 | 43 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 545 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 426 | - | - |
| Coils | Coil | Coil | 627 | 654 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14400.1 | ubiquitin-specific protease 25. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_017247794.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 25 [Daucus carota subsp. sativus] | 0 |
| Q9FPS2 | Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana OX=3702 GN=UBP25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165Y5X8 | USP domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013802 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.427464 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.13665 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.279289 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.446394 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.724266 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 20.269161 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.033039 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.370596 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.12606 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.931377 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.032717 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.790438 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.02722 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.345831 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.266885 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.715512 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.354137 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.87585 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.574804 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.560209 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.932437 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.883927 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.260328 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.194916 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.652824 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.437624 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.125444 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.566873 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.900541 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.976749 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.394399 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.20738 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.820692 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.106815 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.8463 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.059033 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.723122 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.797554 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.777119 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.182511 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.841964 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.168507 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.749662 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.716148 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.188623 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.992281 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.359425 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.815797 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.431929 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.900448 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19187, jg21219 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12680 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007191 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19016, Sbi_jg37445 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5285 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015219 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22275, Sgl22314, Sgl27555 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012341, gene:ENSEOMG00000027113 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015600, CQ.Regalona.r1.4BG0016520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163890 |
| Apiaceae | Apium graveolens | 1 | Ag3G02458 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G019970, COCNU_14G008560 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721095 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1881.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G27205, Ftri3G14479 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G14400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g12690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g050670.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G0848, Ceq09G0763, Ceq09G0764 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0975, Cgl09G0823, Cgl09G0824 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15150 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0725s00008.v1.0, Dusal.1057s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g26450 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1120 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1080 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008420 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34844 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1793, BH05.1959, CH05.2028 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0367450, gene-QOZ80_5BG0414870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0078450.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014835 |
| Poaceae | Oryza coarctata | 2 | Oco09G013840, Oco10G013900 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g43480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G197700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0504243 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G017250, Chr12G019470, Chr18G013530, Chr22G004110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G536100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG048860, gene_TRIDC1BG055540 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G329200.2, TraesCS1B02G342600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb292450_P001, Zm00001eb352840_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14387, nbis-gene-25206 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26896, Zma_g28560 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1155 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g19680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10506 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5365 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10669 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.63 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013225 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9278 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6919 |
| Salicaceae | Populus euphratica | 3 | populus_peu00570, populus_peu00621, populus_peu17633 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616584 |
| Solanaceae | Solanum chilense | 1 | SOLCI007357000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026309 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24509_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2469 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07060.v3.1 |