halophFGD

Basic Information

Locus ID: Ag3G02450

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Cationic amino acid transporter

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	276433458	276435173	-	Ag3G02450

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.12	47,259.98 Da	28.22	100.92	0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13520	Amino acid permease	63	324	1.3E-33	IPR002293
Pfam	PF13906	C-terminus of AA_permease	359	408	1.0E-13	IPR029485
Gene3D	G3DSA:1.20.1740.10	Amino acid/polyamine transporter I	59	348	3.4E-60	-

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03294 (basic amino acid/polyamine antiporter, APA family)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17120.1	cationic amino acid transporter 8. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.
RefSeq	XP_017243714.1	PREDICTED: cationic amino acid transporter 8, vacuolar [Daucus carota subsp. sativus]
Swiss-Prot	Q9SHH0	Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana OX=3702 GN=CAT8 PE=2 SV=1
TrEMBL	A0A165Y6G4	AA_permease_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013793 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.055525	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.014335	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.091341	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.798728	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	10.852893	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.251736	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.953406	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	4.849129	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	27.866943	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	31.71386	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	33.011787	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	39.869617	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	34.060734	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	33.654915	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	15.311683	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.92552	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	19.70059	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	19.476183	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	16.190931	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	13.168292	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.820007	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	28.242765	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	24.720751	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	31.596142	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	23.41308	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	25.518122	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	22.852243	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	18.800348	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	20.614588	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.153713		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.360324		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.980513		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.174869		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	17.477062		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	8.987569		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.268712		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.113088		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.685763		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.468121	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.57063	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.724419	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	6.58691	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.44984	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.328238	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	19.247026	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.781255	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.57757	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.384161	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	19.766363	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.732853	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg19207, jg20812, jg22319, jg3931
Aizoaceae	Mesembryanthemum crystallinum	5	gene_12647, gene_22589, gene_22592, gene_4933, gene_5004
Amaranthaceae	Atriplex hortensis	3	Ah007231, Ah007234, Ah016437
Amaranthaceae	Beta vulgaris	3	BVRB_5g118540, BVRB_8g187560, BVRB_8g187580
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg19030, Sbi_jg25686, Sbi_jg25687, Sbi_jg32654 ... Sbi_jg37458, Sbi_jg9522, Sbi_jg9523
Amaranthaceae	Salicornia europaea	4	Seu_jg19107, Seu_jg19108, Seu_jg5301, Seu_jg7647
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001681, GOSA_00013805, GOSA_00015293, GOSA_00016596
Amaranthaceae	Suaeda glauca	10	Sgl21021, Sgl22376, Sgl25660, Sgl26377, Sgl27625, Sgl30811 ... Sgl44465, Sgl49215, Sgl71646, Sgl75221
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000006817, gene:ENSEOMG00000009979 ... gene:ENSEOMG00000011499, gene:ENSEOMG00000012329, gene:ENSEOMG00000028203, gene:ENSEOMG00000042226, gene:ENSEOMG00000043181, gene:ENSEOMG00000045097
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0015680, CQ.Regalona.r1.4BG0016880 ... CQ.Regalona.r1.4BG0021750, CQ.Regalona.r1.8AG0010440, CQ.Regalona.r1.8BG0011960
Anacardiaceae	Pistacia vera	2	pistato.v30076150, pistato.v30199130
Apiaceae	Apium graveolens	4	Ag3G02450, Ag7G00977, Ag7G00979, Ag7G01118
Arecaceae	Cocos nucifera	7	COCNU_02G002670, COCNU_06G020590, COCNU_06G020600 ... COCNU_12G000550, COCNU_14G008750, COCNU_14G008760, scaffold115654G000010
Arecaceae	Phoenix dactylifera	7	gene-LOC103701403, gene-LOC103703712, gene-LOC103710508 ... gene-LOC103715963, gene-LOC103715964, gene-LOC103720583, gene-LOC120108687
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2495.V1.1, AsparagusV1_06.12.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G07092, Ftri17G12312, Ftri17G29035, Ftri3G07973 ... Ftri8G28433
Brassicaceae	Arabidopsis thaliana	3	AT1G17120.1, AT2G34960.1, AT4G21120.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007175m.g.v1.0, Thhalv10016446m.g.v1.0 ... Thhalv10024732m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15240.v2.2, Sp4g17250.v2.2, Sp7g19210.v2.2
Brassicaceae	Brassica nigra	4	BniB01g009340.2N, BniB02g070810.2N, BniB03g022290.2N ... BniB03g027320.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq04G0069, Ceq04G0072, Ceq04G0541, Ceq04G0542, Ceq05G0582 ... Ceq05G2034
Casuarinaceae	Casuarina glauca	4	Cgl04G0092, Cgl04G0639, Cgl05G0605, Cgl07G2535
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno09g10080, gene.Cymno11g07960, gene.Cymno13g02420
Dunaliellaceae	Dunaliella salina	1	Dusal.0560s00007.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g00750, gene.Thate04g00780, gene.Thate04g06300 ... gene.Thate05g14940
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG12.153, evm.TU.LG12.314, evm.TU.LG12.315 ... evm.TU.LG12.319
Plantaginaceae	Plantago ovata	4	Pov_00003562, Pov_00008372, Pov_00013063, Pov_00038550
Plumbaginaceae	Limonium bicolor	6	Lb2G15187, Lb2G15189, Lb2G15190, Lb2G15196, Lb7G34670 ... Lb7G34689
Poaceae	Echinochloa crus-galli	19	AH01.1258, AH01.2728, AH02.230, AH05.4044, AH05.4045 ... AH05.4046, AH05.4047, AH06.1912, BH01.1465, BH01.1466, BH01.3061, BH02.239, BH05.4147, BH06.1756, CH01.3282, CH02.255, CH05.4368, CH06.1948, CH06.2663
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1BG0050780, gene-QOZ80_3AG0224340 ... gene-QOZ80_3BG0269340, gene-QOZ80_5AG0397880, gene-QOZ80_6AG0542150, gene-QOZ80_6BG0495390
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0191460.1.CDS1 ... HORVU.MOREX.r3.3HG0246190.1.CDS1, HORVU.MOREX.r3.5HG0428960.1, HORVU.MOREX.r3.5HG0489610.1.CDS1, HORVU.MOREX.r3.5HG0508440.1
Poaceae	Lolium multiflorum	7	gene-QYE76_001024, gene-QYE76_006044, gene-QYE76_046257 ... gene-QYE76_047943, gene-QYE76_051176, gene-QYE76_063524, gene-QYE76_063525
Poaceae	Oryza coarctata	7	Oco01G004850, Oco02G004850, Oco05G018840, Oco06G019630 ... Oco12G010580, Oco23G010350, Oco24G010200
Poaceae	Oryza sativa	5	LOC_Os01g11160.1, LOC_Os03g43970.1, LOC_Os03g43980.1 ... LOC_Os06g34830.1, LOC_Os12g41890.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G144900, gene-BS78_03G021500 ... gene-BS78_04G307600, gene-BS78_05G146700, gene-BS78_08G146400, gene-BS78_10G157200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0301272, Pt_Chr0701667, Pt_Chr0704433
Poaceae	Sporobolus alterniflorus	9	Chr01G009430, Chr02G028070, Chr02G028570, Chr05G005770 ... Chr05G006270, Chr06G011310, Chr06G019860, Chr10G015870, Chr12G027590
Poaceae	Thinopyrum elongatum	4	Tel2E01G723700, Tel5E01G099200, Tel5E01G410800 ... Tel5E01G597300
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG061430, gene_TRIDC2BG065140 ... gene_TRIDC5AG006550, gene_TRIDC5AG054960, gene_TRIDC5BG007640
Poaceae	Triticum aestivum	14	TraesCS2A02G425919.1.cds1, TraesCS2B02G446235.1.cds1 ... TraesCS2D02G423900.1.cds1, TraesCS3A02G133100.1.cds1, TraesCS3B02G166500.1.cds1, TraesCS3D02G149300.1.cds1, TraesCS5A02G042900.1, TraesCS5A02G256600.1.cds1, TraesCS5A02G375600.1, TraesCS5B02G046500.1, TraesCS5B02G256000.1.cds1, TraesCS5D02G051400.1, TraesCS5D02G265100.1.cds1, TraesCS5D02G385125.1
Poaceae	Zea mays	4	Zm00001eb050630_P001, Zm00001eb120240_P001 ... Zm00001eb136100_P001, Zm00001eb277830_P001
Poaceae	Zoysia japonica	6	nbis-gene-10283, nbis-gene-19335, nbis-gene-24369 ... nbis-gene-32632, nbis-gene-39602, nbis-gene-44525
Poaceae	Zoysia macrostachya	6	Zma_g25333, Zma_g30662, Zma_g32900, Zma_g7257, Zma_g873 ... Zma_g9584
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2223, evm.TU.LG01.859, evm.TU.LG06.841 ... evm.TU.LG11.16, evm.TU.LG13.945, evm.TU.LG14.1399, evm.TU.LG19.415, evm.TU.LG21.607, evm.TU.LG23.152, evm.TU.LG24.145
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g23790, gene.Posoc08g07290, gene.Posoc10g05030
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_14_RagTag.957, evm.TU.Scaffold_14_RagTag.958 ... evm.TU.Scaffold_16_RagTag.863, evm.TU.Scaffold_4_RagTag.1528, evm.TU.Scaffold_6_RagTag.1008
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-15654, nbisL1-mrna-16730, nbisL1-mrna-16731 ... nbisL1-mrna-16805, nbisL1-mrna-16806, nbisL1-mrna-25034, nbisL1-mrna-25035, nbisL1-mrna-26212
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11446, nbisL1-mrna-13963, nbisL1-mrna-19453 ... nbisL1-mrna-19454, nbisL1-mrna-5232
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-17260, nbisL1-mrna-17261, nbisL1-mrna-19227 ... nbisL1-mrna-4357, nbisL1-mrna-861
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.326, add.evm.TU.utg000011l.242 ... add.evm.TU.utg000025l.55, evm.TU.utg000022l.59, evm.TU.utg000025l.122
Rhizophoraceae	Kandelia obovata	4	Maker00000634, Maker00008243, Maker00012273, Maker00016189
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-17578, nbisL1-mrna-20177, nbisL1-mrna-22267 ... nbisL1-mrna-56, nbisL1-mrna-8644
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-10286, nbisL1-mrna-3572, nbisL1-mrna-9173 ... nbisL1-mrna-9174, nbisL1-mrna-9635
Salicaceae	Populus euphratica	7	populus_peu00678, populus_peu29190, populus_peu30547 ... populus_peu34666, populus_peu37516, populus_peu38149, populus_peu38158
Solanaceae	Lycium barbarum	5	gene-LOC132601915, gene-LOC132621762, gene-LOC132623046 ... gene-LOC132625192, gene-LOC132636527
Solanaceae	Solanum chilense	5	SOLCI000152600, SOLCI000768200, SOLCI001265500 ... SOLCI003092800, SOLCI006925700
Solanaceae	Solanum pennellii	5	gene-LOC107005389, gene-LOC107006577, gene-LOC107010806 ... gene-LOC107011810, gene-LOC107011849
Tamaricaceae	Reaumuria soongarica	4	gene_16603, gene_2525, gene_510, gene_6278
Tamaricaceae	Tamarix chinensis	3	TC01G0289, TC05G0410, TC07G2203
Zosteraceae	Zostera marina	2	Zosma03g23710.v3.1, Zosma256g00020.v3.1