halophFGD

Basic Information

Locus ID: Ag3G02408

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	273045765	273050732	+	Ag3G02408

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.16	131,388.52 Da	34.37	100.79	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	38	79	4.8E-8	IPR013210
Pfam	PF13516	Leucine Rich repeat	179	194	0.75	IPR001611
Pfam	PF13516	Leucine Rich repeat	301	316	0.91	IPR001611
Pfam	PF13516	Leucine Rich repeat	276	294	0.46	IPR001611
Pfam	PF13855	Leucine rich repeat	329	389	3.0E-8	IPR001611
Pfam	PF13855	Leucine rich repeat	719	774	1.5E-6	IPR001611
Pfam	PF00069	Protein kinase domain	912	1183	8.4E-43	IPR000719
Pfam	PF00560	Leucine Rich Repeat	527	549	0.18	IPR001611
Pfam	PF12799	Leucine Rich repeats (2 copies)	454	494	1.0E-6	IPR025875
SUPERFAMILY	SSF52047	RNI-like	87	393	1.26E-45	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	891	1185	2.7E-74	IPR011009
SUPERFAMILY	SSF52058	L domain-like	282	794	1.28E-66	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	872	985	1.3E-36	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	176	807	1.2E-293	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	38	153	2.9E-18	IPR032675
Gene3D	G3DSA:3.30.1490.310	-	630	687	1.2E-293	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	986	1204	5.4E-56	-
SMART	SM00369	LRR_typ_2	573	597	32.0	IPR003591
SMART	SM00369	LRR_typ_2	327	351	23.0	IPR003591
SMART	SM00220	serkin_6	910	1185	1.6E-34	IPR000719
SMART	SM00369	LRR_typ_2	107	131	60.0	IPR003591
SMART	SM00369	LRR_typ_2	401	424	19.0	IPR003591
SMART	SM00369	LRR_typ_2	761	784	140.0	IPR003591
SMART	SM00369	LRR_typ_2	452	476	34.0	IPR003591
SMART	SM00369	LRR_typ_2	277	302	95.0	IPR003591
SMART	SM00369	LRR_typ_2	713	736	32.0	IPR003591
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	179	200	7.65805	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	910	1188	37.756874	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	916	939	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	1034	1046	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G13380.1	BRI1-like 3. Similar to BRI, brassinosteroid receptor protein.
RefSeq	XP_017247418.1	PREDICTED: receptor-like protein kinase BRI1-like 3 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LJF3	Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana OX=3702 GN=BRL3 PE=1 SV=1
TrEMBL	Q75N53	non-specific serine/threonine protein kinase OS=Daucus carota OX=4039 GN=LRR-S/T-RLK PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.481127	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	34.580784	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	26.836449	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	29.015779	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	29.368303	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	17.234812	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	21.396732	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.019445	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	11.493637	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	12.111999	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	12.768669	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	7.780864	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	8.86881	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.657924	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.399362	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.506464	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.884755	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.651716	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.196958	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.468861	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	2.107712	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.528571	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.827573	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.90862	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	5.762362	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	3.907386	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.054991	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.008954	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.44337	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.158736		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.414496		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.381459		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.603902		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.861068		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.848557		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.963566		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.419687		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.844864		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.18332	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.618181	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.35412	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.334893	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.619723	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.305512	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.691373	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.942723	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.725374	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.595959	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.836296	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.334204	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg16969, jg20134, jg20597, jg39452, jg5096
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13304, gene_17787
Amaranthaceae	Atriplex hortensis	3	Ah026997, Ah027172, Ah035268
Amaranthaceae	Beta vulgaris	2	BVRB_2g024180, BVRB_6g131900
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg13558, Sbi_jg21385, Sbi_jg22467, Sbi_jg30918 ... Sbi_jg52335, Sbi_jg58360
Amaranthaceae	Salicornia europaea	3	Seu_jg16345, Seu_jg25960, Seu_jg9522
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00016421, GOSA_00017518, GOSA_00023162
Amaranthaceae	Suaeda glauca	6	Sgl33353, Sgl33704, Sgl38707, Sgl39015, Sgl62901, Sgl67514
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000000128, gene:ENSEOMG00000001631 ... gene:ENSEOMG00000003080, gene:ENSEOMG00000003519, gene:ENSEOMG00000020379, gene:ENSEOMG00000025380, gene:ENSEOMG00000028073, gene:ENSEOMG00000049354
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0019470, CQ.Regalona.r1.2AG0021170 ... CQ.Regalona.r1.6AG0021280, CQ.Regalona.r1.6AG0022780, CQ.Regalona.r1.6BG0022460, CQ.Regalona.r1.6BG0024100
Anacardiaceae	Pistacia vera	3	pistato.v30043920, pistato.v30150980, pistato.v30219230
Apiaceae	Apium graveolens	5	Ag3G01242, Ag3G02408, Ag4G02200, Ag7G02272, Ag8G01911
Arecaceae	Cocos nucifera	6	COCNU_01G006760, COCNU_02G000700, COCNU_05G009110 ... COCNU_06G001450, COCNU_11G010960, COCNU_14G000730
Arecaceae	Phoenix dactylifera	6	gene-LOC103696970, gene-LOC103702338, gene-LOC103704826 ... gene-LOC103710640, gene-LOC103713759, gene-LOC103720660
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2219.V1.1, AsparagusV1_03.1255.V1.1 ... AsparagusV1_05.1187.V1.1, AsparagusV1_08.577.V1.1
Asteraceae	Flaveria trinervia	4	Ftri12G24194, Ftri12G31250, Ftri15G22334, Ftri17G02835
Brassicaceae	Arabidopsis thaliana	4	AT1G55610.1, AT2G01950.1, AT3G13380.1, AT4G39400.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003548m.g.v1.0, Thhalv10011192m.g.v1.0 ... Thhalv10019932m.g.v1.0, Thhalv10024249m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g41230.v2.2, Sp2g13390.v2.2, Sp3g11570.v2.2 ... Sp7g36460.v2.2
Brassicaceae	Brassica nigra	5	BniB01g051820.2N, BniB02g065260.2N, BniB03g015200.2N ... BniB05g000520.2N, BniB07g000790.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1580, Ceq06G1844
Casuarinaceae	Casuarina glauca	3	Cgl01G1743, Cgl06G1908, Cgl09G0901
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno06g09320, gene.Cymno12g00570, gene.Cymno16g00720
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g19520, gene.Thate05g25160, gene.Thate09g18080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7279
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.779, evm.TU.LG03.1129, evm.TU.LG05.2132
Plantaginaceae	Plantago ovata	3	Pov_00004331, Pov_00020870, Pov_00025891
Plumbaginaceae	Limonium bicolor	2	Lb1G06042, Lb4G25660
Poaceae	Echinochloa crus-galli	1	CH08.1273
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_1AG0031240, gene-QOZ80_1BG0081200 ... gene-QOZ80_2AG0119340, gene-QOZ80_2BG0174110, gene-QOZ80_6AG0520910, gene-QOZ80_6BG0473390, gene-QOZ80_8AG0627020, gene-QOZ80_8AG0627030, gene-QOZ80_8BG0655710
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0235070.1.CDS1 ... HORVU.MOREX.r3.3HG0285210.1.CDS1, HORVU.MOREX.r3.5HG0471560.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_004382, gene-QYE76_054950
Poaceae	Oryza coarctata	6	Oco01G020520, Oco02G019250, Oco16G006440, Oco17G001930 ... Oco18G001830, Oco19G000240
Poaceae	Oryza sativa	4	LOC_Os01g52050.1, LOC_Os08g25380.1, LOC_Os09g12240.1 ... LOC_Os10g02500.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G267200, gene-BS78_02G140500 ... gene-BS78_03G257300, gene-BS78_09G256400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0500404, Pt_Chr0602728, Pt_Chr0602860, Pt_Chr0702726
Poaceae	Sporobolus alterniflorus	11	Chr02G011190, Chr02G012090, Chr03G015010, Chr05G022490 ... Chr06G021770, Chr08G015100, Chr0G030680, Chr11G015700, Chr15G017360, Chr21G006730, Chr29G007540
Poaceae	Thinopyrum elongatum	3	Tel3E01G173400, Tel3E01G416500, Tel5E01G300700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG012010, gene_TRIDC3AG036670 ... gene_TRIDC3BG016160, gene_TRIDC3BG041310, gene_TRIDC5AG028880, gene_TRIDC5BG030350
Poaceae	Triticum aestivum	9	TraesCS3A02G099400.1.cds1, TraesCS3A02G245000.1.cds1 ... TraesCS3B02G115800.1.cds1, TraesCS3B02G275000.1.cds1, TraesCS3D02G099700.1.cds1, TraesCS3D02G246500.1.cds1, TraesCS5A02G177300.1.cds1, TraesCS5B02G174400.1.cds1, TraesCS5D02G181500.1.cds1
Poaceae	Zea mays	5	Zm00001eb026010_P001, Zm00001eb154730_P001 ... Zm00001eb177520_P001, Zm00001eb309030_P001, Zm00001eb361520_P001
Poaceae	Zoysia japonica	5	nbis-gene-12750, nbis-gene-26311, nbis-gene-28793 ... nbis-gene-43830, nbis-gene-53180
Poaceae	Zoysia macrostachya	5	Zma_g11019, Zma_g15818, Zma_g29683, Zma_g31885, Zma_g8534
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2364, evm.TU.LG07.323, evm.TU.LG15.634 ... evm.TU.LG17.1410
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g22660, gene.Posoc03g09820, gene.Posoc07g05710 ... gene.Posoc09g11180
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_17_RagTag.717, evm.TU.Scaffold_3_RagTag.1028 ... evm.TU.Scaffold_6_RagTag.1611, evm.TU.Scaffold_7_RagTag.3
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17573, nbisL1-mrna-19750, nbisL1-mrna-23409
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10201, nbisL1-mrna-12590, nbisL1-mrna-17770 ... nbisL1-mrna-19847
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12169, nbisL1-mrna-20030, nbisL1-mrna-22391 ... nbisL1-mrna-2296
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000011l.382, add.evm.TU.utg000013l.133 ... add.evm.TU.utg000019l.277, add.evm.TU.utg000028l.1
Rhizophoraceae	Kandelia obovata	2	Maker00004508, Maker00007000
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-19939, nbisL1-mrna-21027, nbisL1-mrna-22836 ... nbisL1-mrna-22860
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14331, nbisL1-mrna-1719, nbisL1-mrna-22537 ... nbisL1-mrna-4469
Salicaceae	Populus euphratica	6	populus_peu00004, populus_peu07264, populus_peu13880 ... populus_peu17081, populus_peu21261, populus_peu23048
Solanaceae	Lycium barbarum	3	gene-LOC132614975, gene-LOC132615004, gene-LOC132616627
Solanaceae	Solanum chilense	4	SOLCI002088200, SOLCI002216100, SOLCI002599500 ... SOLCI004292600
Solanaceae	Solanum pennellii	4	gene-LOC107015854, gene-LOC107017735, gene-LOC107024267 ... gene-LOC107027997
Tamaricaceae	Reaumuria soongarica	3	STRG.19650_chr07_-, STRG.5156_chr03_-, gene_2243
Tamaricaceae	Tamarix chinensis	3	TC03G0328, TC04G0446, TC11G0356
Zosteraceae	Zostera marina	5	Zosma01g05850.v3.1, Zosma03g14440.v3.1, Zosma03g14450.v3.1 ... Zosma05g14380.v3.1, Zosma05g25890.v3.1