halophFGD

Basic Information

Locus ID: Ag3G02404

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	272752468	272756608	+	Ag3G02404

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	46,994.26 Da	24.70	84.71	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	81	348	7.40475E-97	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	78	346	1.6E-47	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	54	346	1.35E-81	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	151	359	9.7E-60	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	47	150	4.9E-35	-
SMART	SM00220	serkin_6	75	346	7.4E-36	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	75	350	39.043068	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	197	209	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	398	420	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G16670.1	Protein kinase superfamily protein.
RefSeq	XP_017244032.1	PREDICTED: putative serine/threonine-protein kinase [Daucus carota subsp. sativus]
Swiss-Prot	Q93YN1	Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1
TrEMBL	A0A165Y8M0	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013750 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.032061	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.180752	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.686609	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	8.551366	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.978032	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.654673	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.846929	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.338962	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.8321	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	18.484322	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.038151	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	11.544871	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	13.502933	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.804914	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.272677	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.737366	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	7.326238	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	21.918531	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	12.002378	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	32.175026	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	31.606419	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.976893	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.936933	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.941262	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	15.35837	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.880326	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.882193	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	8.920841	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.818353	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.626493		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	9.301983		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	10.424132		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	28.016342		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	17.166162		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	38.137447		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	24.887367		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	17.171289		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	22.448864		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	7.359798	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	16.204252	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.05754	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	97.021774	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	78.569893	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	16.476307	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.891798	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	71.560547	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	22.896742	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	12.151499	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	8.507373	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	8.068666	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14786, jg14950, jg20583, jg32042, jg3462, jg38249
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12513, gene_12699, gene_15566, gene_20071
Amaranthaceae	Atriplex hortensis	3	Ah007413, Ah007848, Ah030360
Amaranthaceae	Beta vulgaris	2	BVRB_4g086110, BVRB_7g162210
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18965, Sbi_jg19210, Sbi_jg2061, Sbi_jg34456 ... Sbi_jg37419, Sbi_jg37621
Amaranthaceae	Salicornia europaea	3	Seu_jg2711, Seu_jg5260, Seu_jg5465
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005788, GOSA_00006761, GOSA_00024175
Amaranthaceae	Suaeda glauca	6	Sgl22460, Sgl23287, Sgl27676, Sgl28355, Sgl71215, Sgl74785
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000008434, gene:ENSEOMG00000010708 ... gene:ENSEOMG00000028598, gene:ENSEOMG00000029515, gene:ENSEOMG00000037903, gene:ENSEOMG00000039765, gene:ENSEOMG00000040586, gene:ENSEOMG00000043013
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0016090, CQ.Regalona.r1.4AG0018490 ... CQ.Regalona.r1.4BG0014100, CQ.Regalona.r1.7AG0016550, CQ.Regalona.r1.8AG0004000
Anacardiaceae	Pistacia vera	2	pistato.v30162210, pistato.v30164180
Apiaceae	Apium graveolens	3	Ag11G03178, Ag3G00426, Ag3G02404
Arecaceae	Cocos nucifera	2	COCNU_02G018150, scaffold005805G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103717912, gene-LOC103719386
Asparagaceae	Asparagus officinalis	4	AsparagusV1_06.23.V1.1, AsparagusV1_07.1201.V1.1 ... AsparagusV1_07.2064.V1.1, AsparagusV1_08.2956.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G03531, Ftri15G33063, Ftri17G27718, Ftri3G14561 ... Ftri6G33690
Brassicaceae	Arabidopsis thaliana	1	AT1G16670.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007825m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g14810.v2.2
Brassicaceae	Brassica nigra	5	BniB03g006700.2N, BniB03g026990.2N, BniB03g027000.2N ... BniB03g034160.2N, BniB06g042050.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G0924, Ceq01G1602, Ceq08G1316
Casuarinaceae	Casuarina glauca	4	Cgl01G1042, Cgl01G1767, Cgl07G2497, Cgl08G1342
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g02920, gene.Cymno17g04230
Dunaliellaceae	Dunaliella salina	1	Dusal.0345s00019.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g00240, gene.Thate05g03470, gene.Thate05g19430 ... gene.Thate07g01690
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1103, nbisL1-mrna-9315
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1420, evm.TU.LG05.1037, evm.TU.LG05.1495 ... evm.TU.LG05.1496
Plantaginaceae	Plantago ovata	4	Pov_00004336, Pov_00005114, Pov_00009275, Pov_00038046
Plumbaginaceae	Limonium bicolor	2	Lb4G23232, Lb7G34880
Poaceae	Echinochloa crus-galli	12	AH04.926, AH05.4026, AH06.2687, AH09.2320, BH04.883 ... BH05.4126, BH06.2479, BH09.2518, CH04.942, CH05.4350, CH06.2776, CH09.2755
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0102600, gene-QOZ80_2BG0155920 ... gene-QOZ80_4AG0303650, gene-QOZ80_4BG0334560, gene-QOZ80_5AG0397730, gene-QOZ80_5BG0446270, gene-QOZ80_6AG0548050, gene-QOZ80_6BG0501750, gene-QOZ80_8AG0620540, gene-QOZ80_8BG0652680
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0180660.1, HORVU.MOREX.r3.2HG0195290.1 ... HORVU.MOREX.r3.3HG0240170.1, HORVU.MOREX.r3.5HG0430130.1, HORVU.MOREX.r3.5HG0434380.1, HORVU.MOREX.r3.6HG0566570.1, HORVU.MOREX.r3.6HG0595930.1, HORVU.MOREX.r3.7HG0735560.1
Poaceae	Lolium multiflorum	7	gene-QYE76_000870, gene-QYE76_000871, gene-QYE76_007962 ... gene-QYE76_017869, gene-QYE76_036071, gene-QYE76_046023, gene-QYE76_048297
Poaceae	Oryza coarctata	10	Oco03G003160, Oco04G003070, Oco07G016150, Oco08G015650 ... Oco11G015120, Oco12G015360, Oco15G003950, Oco16G003790, Oco23G010220, Oco24G010080
Poaceae	Oryza sativa	5	LOC_Os02g06930.1, LOC_Os04g52840.1, LOC_Os06g46330.1 ... LOC_Os08g10070.1, LOC_Os12g41710.1
Poaceae	Paspalum vaginatum	5	gene-BS78_04G048000, gene-BS78_06G231700 ... gene-BS78_07G077000, gene-BS78_08G143200, gene-BS78_10G229500
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0104045, Pt_Chr0105931, Pt_Chr0202477, Pt_Chr0401252 ... Pt_Chr0500729, Pt_Chr0704389
Poaceae	Sporobolus alterniflorus	14	Chr02G031830, Chr05G009710, Chr10G020220, Chr11G002400 ... Chr16G002570, Chr17G002280, Chr19G007760, Chr20G013510, Chr23G004560, Chr25G002950, Chr26G015790, Chr27G008910, Chr29G010100, Chr30G002900
Poaceae	Thinopyrum elongatum	5	Tel2E01G783000, Tel5E01G110800, Tel5E01G129700 ... Tel6E01G292900, Tel7E01G784100
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG065760, gene_TRIDC2BG070800 ... gene_TRIDC5AG007540, gene_TRIDC5AG009280, gene_TRIDC5BG009010, gene_TRIDC5BG010980, gene_TRIDC6AG019010, gene_TRIDC6BG024960, gene_TRIDC7AG064700, gene_TRIDC7BG057660
Poaceae	Triticum aestivum	15	TraesCS2A02G462700.1, TraesCS2B02G484300.1 ... TraesCS2D02G463100.1, TraesCS5A02G048600.1, TraesCS5A02G060300.2, TraesCS5B02G053800.1, TraesCS5B02G067800.1, TraesCS5D02G059300.1, TraesCS5D02G071900.1, TraesCS6A02G139400.2, TraesCS6B02G167900.1, TraesCS6D02G129900.1, TraesCS7A02G463500.1, TraesCS7B02G364100.1, TraesCS7D02G451300.1
Poaceae	Zea mays	8	Zm00001eb031590_P001, Zm00001eb070460_P001 ... Zm00001eb135940_P002, Zm00001eb154780_P003, Zm00001eb171260_P001, Zm00001eb207430_P001, Zm00001eb273900_P002, Zm00001eb431130_P002
Poaceae	Zoysia japonica	7	nbis-gene-22888, nbis-gene-29895, nbis-gene-40560 ... nbis-gene-47535, nbis-gene-48556, nbis-gene-5869, nbis-gene-9759
Poaceae	Zoysia macrostachya	6	Zma_g14993, Zma_g20466, Zma_g21980, Zma_g23739, Zma_g26113 ... Zma_g30993
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.780, evm.TU.LG09.1175, evm.TU.LG09.1952 ... evm.TU.LG12.1704, evm.TU.LG14.1347
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g07190, gene.Posoc10g05510
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.1565, evm.TU.Scaffold_4_RagTag.1631 ... evm.TU.Scaffold_5_RagTag.104, evm.TU.Scaffold_9_RagTag.122
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10505, nbisL1-mrna-5270
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-17604, nbisL1-mrna-21027, nbisL1-mrna-5364
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10670, nbisL1-mrna-3898, nbisL1-mrna-7565
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000003l.92, evm.TU.utg000006l.62 ... evm.TU.utg000008l.897, evm.TU.utg000016l.550
Rhizophoraceae	Kandelia obovata	3	Maker00013514, Maker00017098, Maker00017528
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2154, nbisL1-mrna-7723, nbisL1-mrna-9279
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-12781, nbisL1-mrna-21661, nbisL1-mrna-331 ... nbisL1-mrna-6918, nbisL1-mrna-9542
Salicaceae	Populus euphratica	5	populus_peu00268, populus_peu00582, populus_peu06286 ... populus_peu11699, populus_peu20117
Solanaceae	Lycium barbarum	4	gene-LOC132607112, gene-LOC132616556, gene-LOC132627556 ... gene-LOC132631984
Solanaceae	Solanum chilense	4	SOLCI002498700, SOLCI003313800, SOLCI004669800 ... SOLCI005646100
Solanaceae	Solanum pennellii	3	gene-LOC107026478, gene-LOC107029807, gene-LOC107032273
Tamaricaceae	Reaumuria soongarica	3	gene_4484, gene_6051, gene_6926
Tamaricaceae	Tamarix chinensis	3	TC02G2060, TC02G3672, TC07G0112
Zosteraceae	Zostera marina	1	Zosma01g04770.v3.1