Basic Information
Locus ID:
Ag3G02399
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 272401710 | 272411306 | + | Ag3G02399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 90,697.07 Da | 34.97 | 85.91 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 42 | 80 | 0.1 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 226 | 255 | 0.2 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 529 | 1.65E-31 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 393 | 694 | 2.79E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 482 | 742 | 4.1E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 127 | 2.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 161 | 446 | 3.3E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 548 | 584 | 7.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 530 | 9.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 37 | 80 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 628 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 216 | 256 | 0.015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 0.005 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 224 | 255 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 337 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 333 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 44 | 89 | 10.074014 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18900.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017247838.1 | PREDICTED: WD repeat-containing protein 75 [Daucus carota subsp. sativus] | 0 |
| Q7ZVR1 | WD repeat-containing protein 75 OS=Danio rerio OX=7955 GN=wdr75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A165Y8Q5 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013745 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.699418 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.740041 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.937726 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.10465 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.143991 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.199986 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.783168 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.889784 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.980261 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.83279 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.239515 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.077505 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 22.900961 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.85515 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.850474 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.231821 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.477102 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.019454 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.695632 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.155366 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.500987 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.567796 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.426703 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 13.467479 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.08045 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.870711 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.158848 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.657394 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.083916 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.721299 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.986241 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.188591 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.301333 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.518053 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.505022 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.10038 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.896513 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.372438 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.656133 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.381556 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.562909 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.948938 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.910832 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.730896 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.451614 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.757391 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.309673 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.386564 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.999131 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.233395 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20577 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9560 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016077 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25763, Sbi_jg9590 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19050 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020491 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43894, Sgl48663 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010905, gene:ENSEOMG00000032463 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0010420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30263260 |
| Apiaceae | Apium graveolens | 1 | Ag3G02399 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721350 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3179.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26605 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G18900.1, AT3G26480.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022562m.g.v1.0, Thhalv10024453m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g067880.2N, BniB05g005540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1080 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1167 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno08g02400, gene.Cymno17g04000 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0661s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g19760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-24 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1100 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006248, Pov_00031801 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18224 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4018, BH05.4110, CH05.4333 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0397570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0430390.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000887 |
| Poaceae | Oryza coarctata | 2 | Oco23G010140, Oco24G009980 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g41620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G140500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704371 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018830, Chr06G019690, Chr19G007840, Chr27G008840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G112600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG007760, gene_TRIDC5BG009220 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G049800.1, TraesCS5B02G055400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb031520_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44547 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25316 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1081, evm.TU.LG22.824 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05880 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2048 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25451 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7835 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4813 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1195 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001268 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14265 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20958 |
| Salicaceae | Populus euphratica | 3 | populus_peu05426, populus_peu12043, populus_peu12045 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616850 |
| Solanaceae | Solanum chilense | 1 | SOLCI004294700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026497 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15415_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1403 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23990.v3.1 |