Basic Information
Locus ID:
Ag3G02375
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
RIBOSOMAL protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 269925937 | 269928860 | + | Ag3G02375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.33 | 21,085.14 Da | 55.15 | 77.29 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00432 | Ribosomal_L18_L5e | 82 | 185 | 2.2482E-20 | - |
| Pfam | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | 88 | 187 | 2.3E-9 | IPR005484 |
| SUPERFAMILY | SSF53137 | Translational machinery components | 89 | 185 | 1.94E-18 | - |
| Gene3D | G3DSA:3.30.420.80 | Ribosomal protein S11 | 48 | 188 | 1.0E-16 | IPR036967 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20230.1 | Ribosomal L18p/L5e family protein. | 0 |
| RefSeq | XP_017224560.1 | PREDICTED: 50S ribosomal protein L18 [Daucus carota subsp. sativus] | 0 |
| A5FZU9 | Large ribosomal subunit protein uL18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1 | 0 | |
| TrEMBL | A0A7J7HIH4 | 50S ribosomal protein L18-like OS=Camellia sinensis OX=4442 GN=HYC85_010654 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.376251 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.602024 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.975189 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.316677 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.73106 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.903048 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.468962 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.592834 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.61565 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.906809 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.298849 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.939079 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.655643 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.764072 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.763008 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 29.161337 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.226723 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 41.288818 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 42.103741 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.166142 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 41.06422 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.051805 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.772076 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 23.461498 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.252941 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.944466 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 41.885174 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 36.838383 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 33.38921 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 25.127298 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.833445 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.842239 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.231335 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 22.333694 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.386484 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 21.799549 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.758469 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.711414 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 39.980953 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 40.069138 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 57.580936 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.612728 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.915857 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 14.87653 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.849136 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 24.748768 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.142944 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.571991 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.026503 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.468124 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1717 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1274 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023357 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg29090, Sbi_jg29093, Sbi_jg3310, Sbi_jg6100, Sbi_jg6102 |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg15736, Seu_jg15738, Seu_jg6624, Seu_jg6626, Seu_jg6629 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000121 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11464, Sgl16843, Sgl16860 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014126, gene:ENSEOMG00000036052 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007870, CQ.Regalona.r1.2BG0021640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30035830 |
| Apiaceae | Apium graveolens | 1 | Ag3G02375 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704673 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G12671 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20230.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18250.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g043670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0991 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0988 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g21730 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1370 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00008927, Pov_00008930, Pov_00016965 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G28872, Lb5G28877 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3051, BH07.2877, CH07.2959 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0141460, gene-QOZ80_2BG0197060 |
| Poaceae | Oryza coarctata | 2 | Oco03G018570, Oco04G019310 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g46440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G234000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G023130, Chr15G006280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G487200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG040380, gene_TRIDC6BG047310 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G263200.1.cds1, TraesCS6B02G290300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb187680_P002, Zm00001eb251090_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9087 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14165 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g02630, gene.Posoc10g02690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.668 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9565 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14292 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18222 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.567 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003632 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20010, nbisL1-mrna-2944 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20376 |
| Salicaceae | Populus euphratica | 2 | populus_peu16605, populus_peu18895 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645860 |
| Solanaceae | Solanum chilense | 2 | SOLCI004982800, SOLCI006663500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008007 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32997_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0059 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09740.v3.1 |