Basic Information
Locus ID:
Ag3G02356
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transducin beta-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 267445906 | 267450767 | + | Ag3G02356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 96,584.83 Da | 38.95 | 90.91 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 342 | 642 | 1.628E-56 | - |
| CDD | cd00200 | WD40 | 53 | 467 | 3.38807E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 130 | 1.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 423 | 9.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 563 | 600 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 487 | 515 | 0.1 | IPR001680 |
| Pfam | PF08625 | Utp13 specific WD40 associated domain | 665 | 798 | 7.2E-42 | IPR013934 |
| Pfam | PF00400 | WD domain, G-beta repeat | 179 | 216 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 524 | 558 | 3.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 174 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 55 | 88 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 430 | 467 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 339 | 642 | 5.86E-66 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 26 | 400 | 8.83E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 521 | 690 | 1.4E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 134 | 4.9E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 302 | 520 | 4.4E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 135 | 301 | 1.4E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 9 | 46 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 379 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 174 | 4.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 559 | 4.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 216 | 2.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 604 | 643 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 478 | 517 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 562 | 601 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 467 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 424 | 5.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 6.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 527 | 564 | 11.181047 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 10.390142 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 389 | 427 | 9.019239 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 132 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 611 | 642 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 183 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 611 | 642 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 389 | 433 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 434 | 469 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 217 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 527 | 568 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 434 | 469 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 225 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 91 | 9.309238 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 569 | 606 | 9.54651 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 177 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 569 | 610 | 12.780889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 203 | 217 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 411 | 425 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 117 | 131 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 161 | 175 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 4.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 411 | 425 | 4.1E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 454 | 468 | 4.1E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 861 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. | 0 |
| RefSeq | XP_017247974.1 | PREDICTED: transducin beta-like protein 3 [Daucus carota subsp. sativus] | 0 |
| Q9LFE2 | Protein TORMOZ EMBRYO DEFECTIVE OS=Arabidopsis thaliana OX=3702 GN=TOZ PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AAQ6 | Utp13 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014578 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.657506 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.129291 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.275337 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.259109 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.56139 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.325068 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.018692 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.06661 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.82848 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.546291 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.112587 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.332504 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.574875 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.585585 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.050804 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.928669 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.162829 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.832043 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.34338 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.876447 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.890656 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.112581 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.063134 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.69482 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.793882 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.394582 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.520587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.482428 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.676114 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.530361 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.175533 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.62797 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.569587 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.088249 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.111714 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.805515 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.884799 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.910102 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.263741 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.37726 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.50104 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.798635 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.649402 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.450182 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.003302 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 16.951347 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.894742 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.683239 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.258348 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.134684 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2053 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15511 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024730 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39300, Sbi_jg54626 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020542 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl15114, Sgl20242, Sgl20255 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015509, gene:ENSEOMG00000032914 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0015600, CQ.Regalona.r1.1BG0010080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217010 |
| Apiaceae | Apium graveolens | 1 | Ag3G02356 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012200, COCNU_07G003690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701598 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3487.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24593 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g046000.2N, BniB05g022400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1761 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1937 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g08420 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0002s00015.v1.0, Dusal.0002s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2404 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011279 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03207, Lb1G03224 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2142, BH09.2305, CH09.2445 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0305630, gene-QOZ80_4BG0336600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197290.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045955, gene-QYE76_046012 |
| Poaceae | Oryza coarctata | 2 | Oco07G014590, Oco08G014050 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g50660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G210800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0206006, Pt_Chr0301539, Pt_Chr0301550, Pt_Chr0305598 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G003250, Chr25G004250, Chr26G014440, Chr30G004100 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G758800, Tel7E01G881400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG063940, gene_TRIDC2BG068140 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G447700.1, TraesCS2B02G468100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb072270_P001, Zm00001eb153310_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22717 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20346 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2511, evm.TU.LG23.732 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g20630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.575 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7607 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15718 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5596 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011434 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8466 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-680 |
| Salicaceae | Populus euphratica | 2 | populus_peu16232, populus_peu31249 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630652, gene-LOC132632257 |
| Solanaceae | Solanum chilense | 1 | SOLCI002068200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012090 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8601_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2432 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02310.v3.1 |