Basic Information
Locus ID:
Ag3G02355
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 267099399 | 267104112 | + | Ag3G02355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 44,706.57 Da | 45.66 | 85.22 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 108 | 399 | 1.04E-9 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 190 | 398 | 3.1E-9 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 80 | 397 | 12.541819 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16810.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017244300.1 | PREDICTED: uncharacterized protein LOC108216132 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5B7BV44 | Protein kinase domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041407 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.715221 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.267292 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.766718 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.435909 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.76255 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.325694 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.009312 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.388379 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 57.631813 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 52.983627 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 54.119381 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.822468 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 45.589264 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 42.743183 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.50835 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.59853 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.803448 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 41.066673 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 64.311714 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 41.398041 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 34.242905 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.926839 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.444488 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.948441 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.548155 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 54.81953 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 47.088089 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 62.652889 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.281761 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 52.327095 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 63.978172 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 60.129356 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 49.875534 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 28.352718 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.264675 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 30.158472 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 38.893341 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 47.245434 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 80.268768 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 93.200386 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 133.799393 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.839791 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.160198 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.76424 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 46.397797 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.456974 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.054544 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.523682 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.188124 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.871275 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2056 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16392 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018356 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g049690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14821, Sbi_jg55603 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26159 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017982 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01072, Sgl06158 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001949, gene:ENSEOMG00000030370 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0007480, CQ.Regalona.r1.3AG0007490 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30095000 |
| Apiaceae | Apium graveolens | 1 | Ag3G02355 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G003670 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714586 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1190.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G13929 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013656m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27320.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g022370.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1779 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1951 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g05630 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g06990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1800 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011252 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G30752, Lb6G30754 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3082, BH07.2903, CH07.2984 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0141740, gene-QOZ80_2BG0197320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0605820.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G018750, Oco04G019480 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g46750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G231200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203827, Pt_Chr0203848 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G004610, Chr15G006060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G490200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG040730, gene_TRIDC6BG047690 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G265400.3, TraesCS6B02G292400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb187800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22184 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16930 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG09.1252, evm.TU.LG09.1253 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g00720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.580 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7600 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4903 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5591 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.345 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8461 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-684 |
| Salicaceae | Populus euphratica | 2 | populus_peu19276, populus_peu37394 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632253 |
| Solanaceae | Solanum chilense | 1 | SOLCI002067900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012336 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3917 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2827 |
| Zosteraceae | Zostera marina | 1 | Zosma02g02760.v3.1 |