Basic Information
Locus ID:
Ag3G02333
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc-binding dehydrogenase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 262701008 | 262704052 | + | Ag3G02333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 36,494.00 Da | 16.21 | 109.01 | 0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08241 | QOR1 | 1 | 332 | 1.3879E-141 | - |
| Pfam | PF08240 | Alcohol dehydrogenase GroES-like domain | 36 | 94 | 4.8E-8 | IPR013154 |
| Pfam | PF00107 | Zinc-binding dehydrogenase | 159 | 298 | 9.7E-22 | IPR013149 |
| SUPERFAMILY | SSF50129 | GroES-like | 34 | 146 | 2.43E-29 | IPR011032 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 121 | 300 | 1.97E-40 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 131 | 278 | 1.6E-87 | - |
| Gene3D | G3DSA:3.90.180.10 | - | 33 | 329 | 1.6E-87 | - |
| SMART | SM00829 | PKS_ER_names_mod | 16 | 333 | 1.9E-21 | IPR020843 |
| ProSitePatterns | PS01162 | Quinone oxidoreductase / zeta-crystallin signature. | 148 | 169 | - | IPR002364 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56460.1 | GroES-like zinc-binding alcohol dehydrogenase family protein. | 0 |
| RefSeq | XP_017243748.1 | PREDICTED: quinone oxidoreductase-like protein 2 homolog [Daucus carota subsp. sativus] | 0 |
| B0BNC9 | Quinone oxidoreductase-like protein 2 OS=Rattus norvegicus OX=10116 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162A9C9 | Enoyl reductase (ER) domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014656 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 59.161781 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 63.963097 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 70.535019 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 78.783707 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 71.303543 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 57.082092 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 60.257561 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 36.47892 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 88.303734 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 90.27121 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 92.526985 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 107.362785 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 107.708305 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 120.351196 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 189.527847 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 201.698044 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 145.205048 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 91.664955 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 93.437347 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 101.117737 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 116.530029 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 129.645035 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 98.82489 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 117.476051 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 121.190392 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 118.843941 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 86.840286 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 102.770477 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 125.902679 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 33.999184 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 32.510601 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 28.981581 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 63.519592 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 52.613903 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 51.595741 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 67.856728 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 49.469551 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 56.925068 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 36.341232 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 32.081299 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 30.593534 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 44.559956 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 54.419575 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 57.737808 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 53.095398 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 42.407181 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 84.138191 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 84.604401 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 70.074516 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 69.512299 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34062 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17109 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032175 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30093, Sbi_jg43542 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18360 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004135 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66127, Sgl70437 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013709, gene:ENSEOMG00000019150 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0005310, CQ.Regalona.r1.2BG0004480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178330 |
| Apiaceae | Apium graveolens | 1 | Ag3G02333 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G005520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709721 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.587.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G11886 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G56460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006076m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g056390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0005 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0009 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g13460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g00470 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1648 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006584, Pov_00036309, Pov_00036310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02499 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.3069, BH04.1479, BH05.3112, CH04.1693, CH05.3157 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0377920, gene-QOZ80_5BG0425040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0601820.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010761, gene-QYE76_010823 |
| Poaceae | Oryza coarctata | 1 | Oco10G006570 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g24880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K121700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501301, Pt_Chr0501338 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G014770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G463800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG038080, gene_TRIDC6BG045000 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G246800.1, TraesCS6B02G277800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb070150_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42162 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28043, Zma_g28044 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG05.446, evm.TU.LG05.448, evm.TU.LG25.875 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g06600, gene.Posoc02g33080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.205 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28374 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13229 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7687 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019074 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14037 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21487 |
| Salicaceae | Populus euphratica | 2 | populus_peu19085, populus_peu19100 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611188 |
| Solanaceae | Solanum chilense | 1 | SOLCI007072900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012754, gene-LOC107014461 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13429_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3983 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11860.v3.1 |