Basic Information
Locus ID:
Ag3G02300
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Hydroxyproline-rich glycoprotein family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 253477634 | 253478634 | - | Ag3G02300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.25 | 14,855.09 Da | 48.10 | 75.19 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017247199.1 | PREDICTED: uncharacterized protein LOC108218666 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164YRK1 | Hydroxyproline-rich glycoprotein family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018129 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.220175 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.319772 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.580703 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.457063 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.503616 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.244194 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.277514 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.603959 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.616583 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.229464 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.194998 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.367236 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.141906 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.253418 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.102591 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.327152 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.449386 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2377 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3150 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019046 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15404, Sbi_jg56215 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26681 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020295 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02122, Sgl07273 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001679, gene:ENSEOMG00000031145 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0001710, CQ.Regalona.r1.3BG0001760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30181600 |
| Apiaceae | Apium graveolens | 2 | Ag2G01936, Ag3G02300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700128 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.594.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G21535 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014011m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13900.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g029070.2N, BniB05g059890.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2265 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012546, Pov_00040847 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G07862, Lb1G07867, Lb1G07874 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.5050, BH01.5299 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0232060, gene-QOZ80_3BG0295880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0410800.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G001650, Oco06G001630 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G496700 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G038410, Chr07G005970, Chr12G001010 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G528500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG069960 |
| Poaceae | Triticum aestivum | 3 | TraesCS4B02G320700.1, TraesCS4D02G317200.2 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3063, nbis-gene-4645 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2174, Zma_g4520 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1345, evm.TU.LG11.1555, evm.TU.LG14.636 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g01640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.198 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6839 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.120 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17664 |
| Salicaceae | Populus euphratica | 1 | populus_peu29179 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631772 |
| Solanaceae | Solanum chilense | 1 | SOLCI005348900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015198 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2491 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0280, TC06G1942 |
| Zosteraceae | Zostera marina | 1 | Zosma05g00660.v3.1 |