Basic Information
Locus ID:
Ag3G02237
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Double-stranded RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 240684337 | 240686377 | + | Ag3G02237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 28,351.96 Da | 53.05 | 65.16 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 119 | 183 | 4.4E-11 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 34 | 97 | 5.4E-8 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 30 | 100 | 4.24E-15 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 118 | 183 | 2.04E-15 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 105 | 188 | 4.1E-17 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 18 | 104 | 1.4E-18 | - |
| SMART | SM00358 | DRBM_3 | 33 | 100 | 3.8E-7 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 119 | 184 | 1.8E-9 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 118 | 185 | 11.115709 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 232 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017246637.1 | PREDICTED: double-stranded RNA-binding protein 4-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162AAD9 | Laccase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014728 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.250462 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.282645 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.677257 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.250417 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.334652 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.824363 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.505203 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.534576 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.846546 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19588, jg31617 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16651, gene_19977 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035579 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_1g009890, BVRB_2g027800, BVRB_9g203590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14391, Sbi_jg21635, Sbi_jg22178, Sbi_jg53564 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10191, Seu_jg16109 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008719, GOSA_00012584 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl62660, Sgl65075, Sgl67219, Sgl67282, Sgl69497, Sgl78141 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017840, gene:ENSEOMG00000023554 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0018370, CQ.Regalona.r1.2BG0020050 |
| Anacardiaceae | Pistacia vera | 12 | pistato.v30190630, pistato.v30292060, pistato.v30292930 ... |
| Apiaceae | Apium graveolens | 2 | Ag11G03937, Ag3G02237 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G007670 |
| Arecaceae | Phoenix dactylifera | 7 | gene-LOC103699073, gene-LOC103722271, gene-LOC120108406 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2828.V1.1, AsparagusV1_08.2310.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10654 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014087m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g36120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g054050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0658 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0633 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08440 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21530 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6506 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.574, evm.TU.LG02.575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00029834 |
| Poaceae | Echinochloa crus-galli | 7 | AH08.1404, AH08.1508, BH08.1363, BH08.1640, CH08.1481 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0628610, gene-QOZ80_8BG0657140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031686, gene-QYE76_049748 |
| Poaceae | Oryza coarctata | 2 | Oco15G007470, Oco16G007220 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g29530.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G114700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403108, Pt_Chr0504435, Pt_Chr0504497 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr17G012880, Chr20G007020, Chr21G006190, Chr29G006710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G066800, Tel6E01G345000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG003960, gene_TRIDC6AG024770 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G172500.1, TraesCS6B02G200200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb042470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-49696, nbis-gene-50672 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22923, Zma_g24012 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2246, evm.TU.LG06.812, evm.TU.LG14.1419 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g15330 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60356.5, evm.TU.Scaffold_6_RagTag.1005 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16265 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6580 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1116 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.835 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008314 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13468 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3961 |
| Salicaceae | Populus euphratica | 2 | populus_peu09638, populus_peu24883 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621863, gene-LOC132633246 |
| Solanaceae | Solanum chilense | 1 | SOLCI001738200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011904, gene-LOC107014125 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6305 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0180 |